Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4533 and PP_5695 are separated by 72 nucleotides PP_5695 and PP_4534 are separated by 95 nucleotides PP_4534 and PP_4535 are separated by 584 nucleotides
PP_4533: PP_4533 - mechanosensitive channel of miniconductance, at 5,146,896 to 5,148,197
_4533
PP_5695: PP_5695 - conserved protein of unknown function, at 5,148,270 to 5,148,539
_5695
PP_4534: PP_4534 - conserved protein of unknown function, at 5,148,635 to 5,148,877
_4534
PP_4535: PP_4535 - conserved protein of unknown function, at 5,149,462 to 5,151,465
_4535
Position (kb) 5148
5149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5147.997 kb on + strand, within PP_4533 at 5148.061 kb on - strand, within PP_4533 at 5148.226 kb on - strand at 5148.271 kb on + strand at 5148.272 kb on - strand at 5148.272 kb on - strand at 5148.334 kb on + strand, within PP_5695 at 5148.334 kb on + strand, within PP_5695 at 5148.351 kb on + strand, within PP_5695 at 5148.351 kb on + strand, within PP_5695 at 5148.351 kb on + strand, within PP_5695 at 5148.400 kb on + strand, within PP_5695 at 5148.493 kb on + strand, within PP_5695 at 5148.493 kb on + strand, within PP_5695 at 5148.493 kb on + strand, within PP_5695 at 5148.494 kb on - strand, within PP_5695 at 5148.494 kb on - strand, within PP_5695 at 5148.547 kb on + strand at 5148.547 kb on + strand at 5148.547 kb on + strand at 5148.547 kb on + strand at 5148.548 kb on - strand at 5148.548 kb on - strand at 5148.548 kb on - strand at 5148.548 kb on - strand at 5148.548 kb on - strand at 5148.805 kb on - strand, within PP_4534 at 5148.805 kb on - strand, within PP_4534 at 5148.805 kb on - strand, within PP_4534 at 5148.849 kb on + strand, within PP_4534 at 5148.849 kb on + strand, within PP_4534 at 5148.850 kb on - strand, within PP_4534 at 5148.850 kb on - strand, within PP_4534 at 5148.882 kb on + strand at 5148.882 kb on + strand at 5148.883 kb on - strand at 5148.883 kb on - strand at 5148.907 kb on - strand at 5149.019 kb on + strand at 5149.020 kb on - strand at 5149.020 kb on - strand at 5149.020 kb on - strand at 5149.020 kb on - strand at 5149.020 kb on - strand at 5149.020 kb on - strand at 5149.025 kb on + strand at 5149.025 kb on + strand at 5149.025 kb on + strand at 5149.026 kb on - strand at 5149.026 kb on - strand at 5149.026 kb on - strand at 5149.026 kb on - strand at 5149.026 kb on - strand at 5149.026 kb on - strand at 5149.026 kb on - strand at 5149.026 kb on - strand at 5149.089 kb on + strand at 5149.090 kb on - strand at 5149.124 kb on + strand at 5149.124 kb on + strand at 5149.125 kb on - strand at 5149.125 kb on - strand at 5149.125 kb on - strand at 5149.142 kb on + strand at 5149.143 kb on - strand at 5149.194 kb on + strand at 5149.215 kb on - strand at 5149.253 kb on + strand at 5149.254 kb on - strand at 5149.261 kb on - strand at 5149.288 kb on + strand at 5149.288 kb on + strand at 5149.289 kb on - strand at 5149.289 kb on - strand at 5149.289 kb on - strand at 5149.289 kb on - strand at 5149.289 kb on - strand at 5149.289 kb on - strand at 5149.292 kb on + strand at 5149.292 kb on + strand at 5149.293 kb on - strand at 5149.293 kb on - strand at 5149.293 kb on - strand at 5149.348 kb on + strand at 5149.348 kb on + strand at 5149.349 kb on - strand at 5149.349 kb on - strand at 5149.351 kb on + strand at 5149.351 kb on + strand at 5149.351 kb on + strand at 5149.351 kb on + strand at 5149.352 kb on - strand at 5149.352 kb on - strand at 5149.352 kb on - strand at 5149.352 kb on - strand at 5149.355 kb on + strand at 5149.355 kb on + strand at 5149.356 kb on - strand at 5149.356 kb on - strand at 5149.356 kb on - strand at 5149.356 kb on - strand at 5149.356 kb on - strand at 5149.356 kb on - strand at 5149.356 kb on - strand at 5149.356 kb on - strand at 5149.356 kb on - strand at 5149.378 kb on + strand at 5149.378 kb on + strand at 5149.520 kb on + strand at 5149.520 kb on + strand at 5149.520 kb on + strand at 5149.520 kb on + strand at 5149.520 kb on + strand at 5149.520 kb on + strand at 5149.520 kb on + strand at 5149.521 kb on - strand at 5149.521 kb on - strand at 5149.521 kb on - strand at 5149.521 kb on - strand at 5149.521 kb on - strand at 5149.521 kb on - strand at 5149.620 kb on + strand at 5149.669 kb on - strand, within PP_4535 at 5149.687 kb on + strand, within PP_4535 at 5149.688 kb on - strand, within PP_4535 at 5149.688 kb on - strand, within PP_4535 at 5149.688 kb on - strand, within PP_4535 at 5149.723 kb on - strand, within PP_4535 at 5149.723 kb on - strand, within PP_4535 at 5149.733 kb on + strand, within PP_4535 at 5149.733 kb on + strand, within PP_4535 at 5149.733 kb on + strand, within PP_4535 at 5149.734 kb on - strand at 5149.734 kb on - strand, within PP_4535 at 5149.776 kb on + strand, within PP_4535 at 5149.776 kb on + strand, within PP_4535 at 5149.776 kb on + strand, within PP_4535 at 5149.776 kb on + strand, within PP_4535 at 5149.777 kb on - strand, within PP_4535 at 5149.777 kb on - strand, within PP_4535 at 5149.802 kb on + strand, within PP_4535 at 5149.835 kb on + strand, within PP_4535 at 5149.836 kb on - strand, within PP_4535 at 5149.836 kb on - strand, within PP_4535
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 5,147,997 + PP_4533 0.85 +1.5 5,148,061 - PP_4533 0.89 +0.5 5,148,226 - +0.4 5,148,271 + -0.7 5,148,272 - -0.3 5,148,272 - -1.1 5,148,334 + PP_5695 0.24 +0.3 5,148,334 + PP_5695 0.24 +1.2 5,148,351 + PP_5695 0.30 -0.1 5,148,351 + PP_5695 0.30 +0.1 5,148,351 + PP_5695 0.30 +0.1 5,148,400 + PP_5695 0.48 -1.5 5,148,493 + PP_5695 0.83 -0.6 5,148,493 + PP_5695 0.83 +0.4 5,148,493 + PP_5695 0.83 -1.1 5,148,494 - PP_5695 0.83 -0.7 5,148,494 - PP_5695 0.83 -0.3 5,148,547 + -0.5 5,148,547 + -2.8 5,148,547 + -0.5 5,148,547 + -0.1 5,148,548 - -0.2 5,148,548 - -0.1 5,148,548 - -0.8 5,148,548 - +0.3 5,148,548 - -1.0 5,148,805 - PP_4534 0.70 -2.0 5,148,805 - PP_4534 0.70 +1.7 5,148,805 - PP_4534 0.70 -0.1 5,148,849 + PP_4534 0.88 +2.8 5,148,849 + PP_4534 0.88 -0.2 5,148,850 - PP_4534 0.88 +0.4 5,148,850 - PP_4534 0.88 +0.3 5,148,882 + +0.2 5,148,882 + +0.1 5,148,883 - +0.8 5,148,883 - -0.4 5,148,907 - +2.7 5,149,019 + +0.4 5,149,020 - +0.2 5,149,020 - +0.3 5,149,020 - +0.2 5,149,020 - +0.2 5,149,020 - +0.1 5,149,020 - -2.0 5,149,025 + -0.9 5,149,025 + +0.9 5,149,025 + +0.3 5,149,026 - -0.3 5,149,026 - +1.2 5,149,026 - +0.4 5,149,026 - -0.6 5,149,026 - -1.6 5,149,026 - +0.8 5,149,026 - -0.4 5,149,026 - +1.0 5,149,089 + +1.8 5,149,090 - -1.3 5,149,124 + -0.5 5,149,124 + +0.3 5,149,125 - +0.0 5,149,125 - +0.7 5,149,125 - -0.4 5,149,142 + +0.9 5,149,143 - +0.9 5,149,194 + +1.1 5,149,215 - +0.7 5,149,253 + -0.5 5,149,254 - +0.1 5,149,261 - -0.7 5,149,288 + +0.2 5,149,288 + -0.8 5,149,289 - +0.1 5,149,289 - -1.2 5,149,289 - -0.2 5,149,289 - +0.2 5,149,289 - -0.0 5,149,289 - +2.2 5,149,292 + +0.0 5,149,292 + -0.2 5,149,293 - -0.4 5,149,293 - +0.9 5,149,293 - -0.3 5,149,348 + +1.4 5,149,348 + -0.2 5,149,349 - -0.6 5,149,349 - +0.3 5,149,351 + +0.2 5,149,351 + +0.6 5,149,351 + +0.3 5,149,351 + +0.2 5,149,352 - -0.9 5,149,352 - -1.0 5,149,352 - +1.4 5,149,352 - +0.3 5,149,355 + -0.4 5,149,355 + -1.4 5,149,356 - +1.3 5,149,356 - -0.2 5,149,356 - +0.9 5,149,356 - +0.6 5,149,356 - +1.1 5,149,356 - -2.1 5,149,356 - +0.7 5,149,356 - -0.4 5,149,356 - -0.0 5,149,378 + -0.8 5,149,378 + -0.0 5,149,520 + +1.3 5,149,520 + -0.9 5,149,520 + -0.0 5,149,520 + +0.9 5,149,520 + -0.3 5,149,520 + -0.0 5,149,520 + +0.8 5,149,521 - -0.8 5,149,521 - -1.6 5,149,521 - -0.9 5,149,521 - -0.5 5,149,521 - +0.2 5,149,521 - -0.4 5,149,620 + -0.6 5,149,669 - PP_4535 0.10 +0.9 5,149,687 + PP_4535 0.11 -0.6 5,149,688 - PP_4535 0.11 +2.4 5,149,688 - PP_4535 0.11 +1.3 5,149,688 - PP_4535 0.11 +0.4 5,149,723 - PP_4535 0.13 +0.2 5,149,723 - PP_4535 0.13 +1.2 5,149,733 + PP_4535 0.14 +0.1 5,149,733 + PP_4535 0.14 +2.2 5,149,733 + PP_4535 0.14 -0.7 5,149,734 - +2.2 5,149,734 - PP_4535 0.14 -0.4 5,149,776 + PP_4535 0.16 -0.4 5,149,776 + PP_4535 0.16 -0.5 5,149,776 + PP_4535 0.16 -0.0 5,149,776 + PP_4535 0.16 +0.5 5,149,777 - PP_4535 0.16 +0.4 5,149,777 - PP_4535 0.16 +0.8 5,149,802 + PP_4535 0.17 +0.0 5,149,835 + PP_4535 0.19 +1.4 5,149,836 - PP_4535 0.19 -0.3 5,149,836 - PP_4535 0.19 +0.9
Or see this region's nucleotide sequence