Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4471 and PP_t56 are separated by 396 nucleotides PP_t56 and PP_t55 are separated by 73 nucleotides PP_t55 and PP_t54 are separated by 74 nucleotides PP_t54 and PP_t53 are separated by 71 nucleotides PP_t53 and PP_t52 are separated by 106 nucleotides PP_t52 and PP_4472 are separated by 72 nucleotides PP_4472 and PP_4473 are separated by 167 nucleotides
PP_4471: PP_4471 - Magnesium transporter, at 5,077,313 to 5,078,755
_4471
PP_t56: PP_t56 - tRNA-Arg, at 5,079,152 to 5,079,228
_t56
PP_t55: PP_t55 - tRNA-Arg, at 5,079,302 to 5,079,378
_t55
PP_t54: PP_t54 - tRNA-Arg, at 5,079,453 to 5,079,529
_t54
PP_t53: PP_t53 - tRNA-Arg, at 5,079,601 to 5,079,677
_t53
PP_t52: PP_t52 - tRNA-Ser, at 5,079,784 to 5,079,874
_t52
PP_4472: PP_4472 - carbon storage regulator, at 5,079,947 to 5,080,135
_4472
PP_4473: PP_4473 - aspartokinase, at 5,080,303 to 5,081,538
_4473
Position (kb) 5079
5080 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5078.544 kb on + strand, within PP_4471 at 5078.545 kb on - strand, within PP_4471 at 5078.545 kb on - strand, within PP_4471 at 5078.545 kb on - strand, within PP_4471 at 5078.545 kb on - strand, within PP_4471 at 5078.744 kb on + strand at 5078.818 kb on - strand at 5078.818 kb on - strand at 5078.837 kb on - strand at 5078.840 kb on + strand at 5078.840 kb on + strand at 5078.840 kb on + strand at 5078.841 kb on - strand at 5078.841 kb on - strand at 5078.847 kb on + strand at 5078.847 kb on + strand at 5078.899 kb on + strand at 5078.899 kb on + strand at 5078.899 kb on + strand at 5078.899 kb on + strand at 5078.900 kb on - strand at 5078.900 kb on - strand at 5078.900 kb on - strand at 5078.900 kb on - strand at 5078.907 kb on + strand at 5078.907 kb on + strand at 5078.907 kb on + strand at 5078.908 kb on - strand at 5078.908 kb on - strand at 5078.908 kb on - strand at 5078.908 kb on - strand at 5078.981 kb on + strand at 5079.051 kb on - strand at 5079.051 kb on - strand at 5079.051 kb on - strand at 5079.051 kb on - strand at 5079.064 kb on + strand at 5079.076 kb on + strand at 5079.077 kb on - strand at 5079.077 kb on - strand at 5079.127 kb on - strand at 5079.127 kb on - strand at 5079.127 kb on - strand at 5079.151 kb on - strand at 5079.151 kb on - strand at 5079.207 kb on + strand, within PP_t56 at 5079.207 kb on + strand, within PP_t56 at 5079.237 kb on - strand at 5079.243 kb on - strand at 5079.243 kb on - strand at 5079.264 kb on - strand at 5079.370 kb on + strand, within PP_t55 at 5079.554 kb on - strand at 5079.695 kb on - strand at 5079.697 kb on - strand at 5079.697 kb on - strand at 5080.039 kb on + strand, within PP_4472 at 5080.040 kb on - strand, within PP_4472 at 5080.135 kb on + strand at 5080.135 kb on + strand at 5080.135 kb on + strand at 5080.135 kb on + strand at 5080.135 kb on + strand at 5080.136 kb on - strand at 5080.136 kb on - strand at 5080.147 kb on + strand at 5080.147 kb on + strand at 5080.166 kb on + strand at 5080.304 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 5,078,544 + PP_4471 0.85 +1.3 5,078,545 - PP_4471 0.85 -0.7 5,078,545 - PP_4471 0.85 -3.2 5,078,545 - PP_4471 0.85 +0.7 5,078,545 - PP_4471 0.85 -1.1 5,078,744 + -2.6 5,078,818 - +0.5 5,078,818 - -1.1 5,078,837 - -2.0 5,078,840 + -1.4 5,078,840 + -0.0 5,078,840 + +0.4 5,078,841 - +3.4 5,078,841 - +0.3 5,078,847 + -2.1 5,078,847 + -0.4 5,078,899 + -0.9 5,078,899 + +0.1 5,078,899 + +0.1 5,078,899 + -1.3 5,078,900 - +0.4 5,078,900 - -0.3 5,078,900 - +0.3 5,078,900 - +0.3 5,078,907 + -2.7 5,078,907 + -1.0 5,078,907 + -2.6 5,078,908 - +0.9 5,078,908 - -0.4 5,078,908 - -0.2 5,078,908 - -2.5 5,078,981 + -0.7 5,079,051 - -1.1 5,079,051 - -0.2 5,079,051 - -1.2 5,079,051 - +0.0 5,079,064 + -0.1 5,079,076 + -0.2 5,079,077 - +0.1 5,079,077 - -0.3 5,079,127 - -0.3 5,079,127 - +0.4 5,079,127 - -0.3 5,079,151 - +0.8 5,079,151 - +0.5 5,079,207 + PP_t56 0.71 -0.0 5,079,207 + PP_t56 0.71 -1.4 5,079,237 - +0.6 5,079,243 - +0.2 5,079,243 - +1.6 5,079,264 - -1.4 5,079,370 + PP_t55 0.88 +2.9 5,079,554 - -0.3 5,079,695 - -0.3 5,079,697 - +2.3 5,079,697 - -0.7 5,080,039 + PP_4472 0.49 -0.7 5,080,040 - PP_4472 0.49 -2.3 5,080,135 + +0.7 5,080,135 + -0.2 5,080,135 + -0.6 5,080,135 + -2.4 5,080,135 + -0.6 5,080,136 - -2.0 5,080,136 - +0.9 5,080,147 + +0.3 5,080,147 + -1.6 5,080,166 + -1.3 5,080,304 + -0.3
Or see this region's nucleotide sequence