Strain Fitness in Pseudomonas putida KT2440 around PP_4354

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4352 and PP_4353 are separated by 2 nucleotidesPP_4353 and PP_4354 are separated by 7 nucleotidesPP_4354 and PP_4355 are separated by 21 nucleotidesPP_4355 and PP_4356 overlap by 1 nucleotides PP_4352: PP_4352 - flagellin export apparatus, substrate specificity protein, at 4,945,438 to 4,946,580 _4352 PP_4353: PP_4353 - Flagellar biosynthetic protein fliR, at 4,946,583 to 4,947,359 _4353 PP_4354: PP_4354 - flagellar export apparatus subunit, at 4,947,367 to 4,947,636 _4354 PP_4355: PP_4355 - flagellar export apparatus subunit, at 4,947,658 to 4,948,413 _4355 PP_4356: PP_4356 - Flagellar protein FliO, at 4,948,413 to 4,948,847 _4356 Position (kb) 4947 4948Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4946.589 kb on + strandat 4946.590 kb on - strandat 4946.641 kb on + strandat 4946.642 kb on - strandat 4946.910 kb on + strand, within PP_4353at 4946.911 kb on - strand, within PP_4353at 4946.985 kb on + strand, within PP_4353at 4947.035 kb on + strand, within PP_4353at 4947.147 kb on - strand, within PP_4353at 4947.147 kb on - strand, within PP_4353at 4947.226 kb on + strand, within PP_4353at 4947.226 kb on + strand, within PP_4353at 4947.226 kb on + strand, within PP_4353at 4947.227 kb on - strand, within PP_4353at 4947.227 kb on - strand, within PP_4353at 4947.373 kb on + strandat 4947.373 kb on + strandat 4947.373 kb on + strandat 4947.374 kb on - strandat 4947.374 kb on - strandat 4947.395 kb on + strand, within PP_4354at 4947.410 kb on + strand, within PP_4354at 4947.410 kb on + strand, within PP_4354at 4947.411 kb on - strand, within PP_4354at 4947.774 kb on + strand, within PP_4355at 4947.775 kb on - strand, within PP_4355at 4948.395 kb on + strandat 4948.396 kb on - strandat 4948.396 kb on - strandat 4948.396 kb on - strandat 4948.396 kb on - strandat 4948.518 kb on + strand, within PP_4356at 4948.518 kb on + strand, within PP_4356at 4948.547 kb on + strand, within PP_4356at 4948.547 kb on + strand, within PP_4356

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
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4,946,589 + -4.1
4,946,590 - +0.4
4,946,641 + -1.5
4,946,642 - -2.8
4,946,910 + PP_4353 0.42 -1.3
4,946,911 - PP_4353 0.42 -1.4
4,946,985 + PP_4353 0.52 -3.3
4,947,035 + PP_4353 0.58 -2.3
4,947,147 - PP_4353 0.73 -1.1
4,947,147 - PP_4353 0.73 -1.2
4,947,226 + PP_4353 0.83 -2.4
4,947,226 + PP_4353 0.83 -4.5
4,947,226 + PP_4353 0.83 -1.5
4,947,227 - PP_4353 0.83 -3.1
4,947,227 - PP_4353 0.83 -1.0
4,947,373 + -1.4
4,947,373 + -4.3
4,947,373 + +0.8
4,947,374 - -1.2
4,947,374 - -2.4
4,947,395 + PP_4354 0.10 -1.8
4,947,410 + PP_4354 0.16 -2.7
4,947,410 + PP_4354 0.16 -1.9
4,947,411 - PP_4354 0.16 -2.4
4,947,774 + PP_4355 0.15 -3.1
4,947,775 - PP_4355 0.15 -1.3
4,948,395 + -1.9
4,948,396 - -2.8
4,948,396 - -1.8
4,948,396 - -2.5
4,948,396 - -2.1
4,948,518 + PP_4356 0.24 -2.0
4,948,518 + PP_4356 0.24 -1.3
4,948,547 + PP_4356 0.31 -1.2
4,948,547 + PP_4356 0.31 -2.3

Or see this region's nucleotide sequence