Strain Fitness in Pseudomonas putida KT2440 around PP_2284

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
2,604,518	+		PP_2282	0.67	+1.0
2,604,518	+		PP_2282	0.67	-0.1
2,604,518	+		PP_2282	0.67	-1.2
2,604,518	+		PP_2282	0.67	-0.7
2,604,518	+		PP_2282	0.67	+0.1
2,604,519	-		PP_2282	0.67	+0.5
2,604,519	-		PP_2282	0.67	+0.1
2,604,519	-		PP_2282	0.67	-1.0
2,604,519	-		PP_2282	0.67	-0.2
2,604,519	-		PP_2282	0.67	+0.0
2,604,647	+		PP_2282	0.80	-0.2
2,604,647	+		PP_2282	0.80	+0.0
2,604,648	-		PP_2282	0.80	+1.2
2,604,648	-				+1.0
2,604,648	-		PP_2282	0.80	+0.2
2,604,648	-		PP_2282	0.80	-0.6
2,604,648	-		PP_2282	0.80	-0.5
2,604,654	+		PP_2282	0.81	+0.8
2,604,654	+		PP_2282	0.81	+0.3
2,604,654	+		PP_2282	0.81	+0.5
2,604,655	-		PP_2282	0.81	+0.4
2,604,655	-		PP_2282	0.81	-1.1
2,604,820	-				-1.1
2,604,848	+				-0.3
2,604,849	-				+0.4
2,604,849	-				-0.0
2,604,895	-				+0.2
2,604,928	+				+0.6
2,604,928	+				-0.8
2,604,928	+				+0.4
2,604,928	+				-0.5
2,604,928	+				+0.8
2,604,928	+				-0.8
2,604,938	-				+0.2
2,604,938	-				-0.1
2,604,954	-				+0.3
2,605,089	+		PP_2283	0.32	+0.1
2,605,089	+		PP_2283	0.32	-1.0
2,605,090	-		PP_2283	0.32	-0.7
2,605,119	+		PP_2283	0.37	+0.2
2,605,119	+		PP_2283	0.37	+0.5
2,605,157	+		PP_2283	0.44	+1.0
2,605,227	+		PP_2283	0.56	+0.4
2,605,228	-		PP_2283	0.56	+1.0
2,605,228	-		PP_2283	0.56	+0.6
2,605,305	+		PP_2283	0.69	-0.2
2,605,305	+		PP_2283	0.69	-0.9
2,605,305	+		PP_2283	0.69	+0.7
2,605,306	-		PP_2283	0.69	-0.1
2,605,306	-		PP_2283	0.69	+0.1
2,605,306	-		PP_2283	0.69	+0.8
2,605,306	-		PP_2283	0.69	-0.2
2,605,437	+				+0.4
2,605,438	-				-0.3
2,605,458	+				+0.5
2,605,459	-				-0.1
2,605,459	-				+0.6
2,605,485	+				-1.3
2,605,486	-				-0.1
2,605,490	+				+0.3
2,605,490	+				+0.5
2,605,490	+				+0.3
2,605,490	+				-0.5
2,605,490	+				-0.6
2,605,490	+				+0.3
2,605,490	+				-0.6
2,605,490	+				+0.7
2,605,491	-				+1.7
2,605,491	-				-0.4
2,605,491	-				+0.8
2,605,491	-				+0.0
2,605,491	-				-0.4
2,605,491	-				-0.4
2,605,491	-				+0.6
2,605,491	-				-0.3
2,605,498	+				+0.0
2,605,499	-				+0.4
2,605,499	-				-0.3
2,605,747	+		PP_2284	0.11	-0.3
2,605,747	+		PP_2284	0.11	+0.9
2,605,748	-		PP_2284	0.11	+0.2
2,605,748	-		PP_2284	0.11	+0.8
2,605,854	+		PP_2284	0.15	+1.0
2,605,854	+		PP_2284	0.15	-0.9
2,605,855	-		PP_2284	0.16	+0.4
2,605,855	-		PP_2284	0.16	-0.1
2,605,855	-		PP_2284	0.16	-0.8
2,605,949	+		PP_2284	0.20	+0.2
2,605,950	-		PP_2284	0.20	+0.2
2,605,953	+		PP_2284	0.20	+1.2
2,605,954	-		PP_2284	0.20	-0.5
2,605,966	-		PP_2284	0.20	+0.6
2,605,997	+		PP_2284	0.22	+0.6
2,605,998	-		PP_2284	0.22	-0.3
2,605,998	-		PP_2284	0.22	+0.5
2,606,002	-		PP_2284	0.22	+0.2
2,606,002	-		PP_2284	0.22	-0.8
2,606,055	+		PP_2284	0.24	-0.2
2,606,055	+		PP_2284	0.24	-3.6
2,606,127	+		PP_2284	0.27	+0.4
2,606,127	+		PP_2284	0.27	+0.2
2,606,128	-		PP_2284	0.27	+0.6
2,606,163	+		PP_2284	0.29	+0.5
2,606,164	-		PP_2284	0.29	-0.6
2,606,206	+		PP_2284	0.30	+0.3
2,606,301	+		PP_2284	0.35	+0.4
2,606,301	+		PP_2284	0.35	-0.4
2,606,301	+		PP_2284	0.35	-1.6
2,606,302	-		PP_2284	0.35	+0.7
2,606,302	-		PP_2284	0.35	-0.2
2,606,302	-		PP_2284	0.35	-0.6
2,606,304	+		PP_2284	0.35	-1.6
2,606,304	+		PP_2284	0.35	-0.4
2,606,304	+		PP_2284	0.35	-0.4
2,606,305	-		PP_2284	0.35	+0.3
2,606,311	-		PP_2284	0.35	+0.5
2,606,311	-		PP_2284	0.35	-0.0
2,606,311	-		PP_2284	0.35	-0.8
2,606,311	-		PP_2284	0.35	-0.8
2,606,311	-		PP_2284	0.35	+1.4
2,606,313	+		PP_2284	0.35	-0.2
2,606,313	+		PP_2284	0.35	-0.5
2,606,314	-		PP_2284	0.35	-0.8
2,606,314	-		PP_2284	0.35	-0.2
2,606,657	+				-0.7
2,606,657	+		PP_2284	0.50	-0.1
2,606,657	+		PP_2284	0.50	-0.9
2,606,657	+				+3.2
2,606,657	+		PP_2284	0.50	-0.1
2,606,658	-		PP_2284	0.50	+0.4
2,606,658	-		PP_2284	0.50	-0.4
2,606,658	-		PP_2284	0.50	+0.4
2,606,658	-		PP_2284	0.50	-1.3
2,606,661	+		PP_2284	0.50	-0.5
2,606,662	-		PP_2284	0.50	-2.5
2,606,662	-		PP_2284	0.50	-0.3
2,606,848	-		PP_2284	0.58	+0.1
2,606,848	-		PP_2284	0.58	-0.0
2,606,889	+		PP_2284	0.60	+0.7
2,606,890	-		PP_2284	0.60	+0.1
2,606,952	+		PP_2284	0.62	-0.6
2,606,999	+		PP_2284	0.64	+0.7
2,606,999	+		PP_2284	0.64	-0.2
2,607,000	-		PP_2284	0.64	-2.1
2,607,040	-		PP_2284	0.66	-0.6
2,607,040	-		PP_2284	0.66	-0.3
2,607,045	+		PP_2284	0.66	+0.2
2,607,046	-		PP_2284	0.66	-0.6
2,607,046	-		PP_2284	0.66	+0.1
2,607,184	-		PP_2284	0.72	-0.6
2,607,234	+		PP_2284	0.74	-0.9
2,607,235	-		PP_2284	0.74	-1.0
2,607,261	+		PP_2284	0.75	-0.6
2,607,262	-		PP_2284	0.75	+0.5
2,607,262	-		PP_2284	0.75	+0.4
2,607,262	-		PP_2284	0.75	-0.6
2,607,298	-		PP_2284	0.77	+0.9
2,607,324	-		PP_2284	0.78	+0.3
2,607,339	+		PP_2284	0.79	-0.1
2,607,339	+		PP_2284	0.79	+0.7
2,607,340	-		PP_2284	0.79	-1.5
2,607,340	-		PP_2284	0.79	+0.3
2,607,340	-		PP_2284	0.79	+1.1
2,607,432	+		PP_2284	0.83	+1.7
2,607,432	+		PP_2284	0.83	-0.2
2,607,433	-		PP_2284	0.83	+0.2
2,607,433	-		PP_2284	0.83	-0.1
2,607,449	+		PP_2284	0.83	-0.3
2,607,449	+		PP_2284	0.83	-0.7
2,607,484	+		PP_2284	0.85	-0.2
2,607,484	+		PP_2284	0.85	+0.6
2,607,485	-		PP_2284	0.85	+1.6
2,607,485	-		PP_2284	0.85	-1.1
2,607,485	-		PP_2284	0.85	-0.8
2,607,485	-		PP_2284	0.85	-1.2
2,607,500	-		PP_2284	0.86	-0.1
2,607,540	+		PP_2284	0.87	+0.1
2,607,630	+				+0.1
2,607,630	+				-2.9
2,607,630	+				+0.5
2,607,630	+				+0.8
2,607,630	+				+0.2
2,607,631	-				+1.1
2,607,631	-				-0.0
2,607,631	-				-0.0
2,607,631	-				+0.6
2,607,631	-				-0.9
2,607,631	-				-0.1
2,607,631	-				+0.2
2,607,631	-				-0.4
2,607,631	-				+1.7
2,607,636	+				-0.2
2,607,636	+				-0.0
2,607,636	+				+1.3
2,607,636	+				+0.0
2,607,636	+				-1.0
2,607,636	+				-0.0
2,607,636	+				-0.5
2,607,636	+				+0.2
2,607,636	+				-0.6
2,607,637	-				-0.6
2,607,637	-				+0.3
2,607,637	-				+0.3
2,607,637	-				-1.8
2,607,637	-				-0.5
2,607,637	-				+0.0
2,607,639	-				+0.1
2,607,639	-				-0.4
2,607,639	-				+1.0
2,607,639	-				-0.2
2,607,639	-				-0.7
2,607,642	+				+0.5
2,607,643	-				-0.3
2,607,643	-				-0.2
2,607,655	+				+1.1
2,607,656	-				-0.2
2,607,679	+				+0.5
2,607,679	+				-0.7
2,607,679	+				-0.2
2,607,679	+				-1.1
2,607,680	-				+0.2
2,607,694	+				-0.5
2,607,694	+				+0.2
2,607,694	+				+0.2
2,607,695	-				+0.9
2,607,849	-				-0.4
2,607,849	-				-0.8
2,608,044	+		PP_5514	0.37	-1.3
2,608,044	+		PP_5514	0.37	-0.1
2,608,044	+		PP_5514	0.37	-0.8
2,608,045	-		PP_5514	0.37	-0.6
2,608,045	-		PP_5514	0.37	+0.4
2,608,123	+		PP_5514	0.56	+0.3
2,608,123	+		PP_5514	0.56	+0.1
2,608,295	+				-0.2
2,608,295	+				+0.0
2,608,295	+				-0.7
2,608,295	+				+1.3
2,608,295	+				-0.9
2,608,296	-				+0.0
2,608,395	+		PP_2285	0.19	-0.2
2,608,395	+		PP_2285	0.19	+0.3
2,608,395	+		PP_2285	0.19	-1.9
2,608,395	+		PP_2285	0.19	-0.3
2,608,395	+		PP_2285	0.19	-3.3
2,608,529	+		PP_2285	0.43	+1.1
2,608,530	-		PP_2285	0.43	-0.6
2,608,530	-		PP_2285	0.43	+0.2
2,608,568	-		PP_2285	0.50	-0.2
2,608,624	-		PP_2285	0.60	-0.2
2,608,624	-		PP_2285	0.60	+0.2
2,608,624	-		PP_2285	0.60	+0.2
2,608,682	-		PP_2285	0.70	+0.6
2,608,692	+		PP_2285	0.72	-0.6
2,608,692	+		PP_2285	0.72	-2.3
2,608,692	+		PP_2285	0.72	-2.8
2,608,747	-		PP_2285	0.81	-0.8
2,608,791	+		PP_2285	0.89	-2.5
2,608,791	+		PP_2285	0.89	-1.6
2,608,792	-		PP_2285	0.89	+1.1