Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5722 and PP_5209 are separated by 163 nucleotides PP_5209 and PP_5210 are separated by 100 nucleotides PP_5210 and PP_5211 are separated by 84 nucleotides PP_5211 and PP_5212 are separated by 339 nucleotides
PP_5722: PP_5722 - conserved protein of unknown function of phage origin, at 5,941,455 to 5,941,889
_5722
PP_5209: PP_5209 - conserved exported protein of unknown function, at 5,942,053 to 5,942,514
_5209
PP_5210: PP_5210 - Alcohol dehydrogenase, zinc-containing, at 5,942,615 to 5,943,592
_5210
PP_5211: PP_5211 - ChaC-related protein, at 5,943,677 to 5,944,234
_5211
PP_5212: PP_5212 - Oxidoreductase, iron-sulfur-binding, at 5,944,574 to 5,945,542
_5212
Position (kb) 5942
5943
5944 Strain fitness (log2 ratio) -2
-1
0
1 at 5941.631 kb on + strand, within PP_5722 at 5941.632 kb on - strand, within PP_5722 at 5941.642 kb on + strand, within PP_5722 at 5941.643 kb on - strand, within PP_5722 at 5941.690 kb on + strand, within PP_5722 at 5941.690 kb on + strand, within PP_5722 at 5941.690 kb on + strand, within PP_5722 at 5941.691 kb on - strand, within PP_5722 at 5941.691 kb on - strand, within PP_5722 at 5941.739 kb on + strand, within PP_5722 at 5941.752 kb on + strand, within PP_5722 at 5941.761 kb on + strand, within PP_5722 at 5941.761 kb on + strand, within PP_5722 at 5941.761 kb on + strand, within PP_5722 at 5941.762 kb on - strand, within PP_5722 at 5941.855 kb on - strand at 5941.855 kb on - strand at 5941.855 kb on - strand at 5941.928 kb on + strand at 5941.928 kb on + strand at 5941.928 kb on + strand at 5941.929 kb on - strand at 5941.929 kb on - strand at 5941.929 kb on - strand at 5941.929 kb on - strand at 5941.969 kb on - strand at 5941.990 kb on + strand at 5941.990 kb on + strand at 5941.990 kb on + strand at 5941.990 kb on + strand at 5941.991 kb on - strand at 5941.991 kb on - strand at 5941.991 kb on - strand at 5942.002 kb on - strand at 5942.024 kb on - strand at 5942.024 kb on - strand at 5942.024 kb on - strand at 5942.249 kb on - strand, within PP_5209 at 5942.249 kb on - strand, within PP_5209 at 5942.249 kb on - strand, within PP_5209 at 5942.249 kb on - strand, within PP_5209 at 5942.301 kb on - strand, within PP_5209 at 5942.301 kb on - strand, within PP_5209 at 5942.333 kb on + strand, within PP_5209 at 5942.333 kb on + strand, within PP_5209 at 5942.333 kb on + strand, within PP_5209 at 5942.333 kb on + strand, within PP_5209 at 5942.334 kb on - strand, within PP_5209 at 5942.367 kb on - strand, within PP_5209 at 5942.367 kb on - strand, within PP_5209 at 5942.367 kb on - strand, within PP_5209 at 5942.473 kb on + strand at 5942.473 kb on + strand at 5942.474 kb on - strand at 5942.490 kb on + strand at 5942.490 kb on + strand at 5942.490 kb on + strand at 5942.491 kb on - strand at 5942.577 kb on + strand at 5942.578 kb on - strand at 5942.578 kb on - strand at 5942.578 kb on - strand at 5942.583 kb on + strand at 5942.608 kb on - strand at 5942.765 kb on + strand, within PP_5210 at 5942.765 kb on + strand, within PP_5210 at 5942.766 kb on - strand, within PP_5210 at 5942.766 kb on - strand, within PP_5210 at 5942.921 kb on + strand, within PP_5210 at 5942.921 kb on + strand, within PP_5210 at 5942.921 kb on + strand, within PP_5210 at 5942.921 kb on + strand, within PP_5210 at 5942.922 kb on - strand, within PP_5210 at 5942.922 kb on - strand, within PP_5210 at 5942.984 kb on + strand, within PP_5210 at 5942.984 kb on + strand, within PP_5210 at 5942.984 kb on + strand, within PP_5210 at 5942.985 kb on - strand, within PP_5210 at 5943.048 kb on + strand, within PP_5210 at 5943.185 kb on + strand, within PP_5210 at 5943.186 kb on - strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.509 kb on + strand at 5943.509 kb on + strand at 5943.510 kb on - strand at 5943.510 kb on - strand at 5943.649 kb on + strand at 5943.774 kb on + strand, within PP_5211 at 5943.774 kb on + strand, within PP_5211 at 5943.775 kb on - strand, within PP_5211 at 5943.853 kb on - strand, within PP_5211 at 5943.853 kb on - strand, within PP_5211 at 5944.101 kb on + strand, within PP_5211 at 5944.101 kb on + strand, within PP_5211 at 5944.102 kb on - strand, within PP_5211 at 5944.102 kb on - strand, within PP_5211 at 5944.124 kb on + strand, within PP_5211 at 5944.182 kb on + strand at 5944.258 kb on + strand at 5944.258 kb on + strand at 5944.309 kb on + strand at 5944.310 kb on - strand at 5944.327 kb on + strand at 5944.328 kb on - strand at 5944.328 kb on - strand at 5944.341 kb on + strand at 5944.354 kb on + strand at 5944.354 kb on + strand at 5944.355 kb on - strand at 5944.355 kb on - strand at 5944.363 kb on - strand at 5944.377 kb on - strand at 5944.400 kb on - strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.443 kb on - strand at 5944.493 kb on + strand at 5944.494 kb on - strand at 5944.494 kb on - strand at 5944.517 kb on + strand at 5944.539 kb on + strand at 5944.547 kb on + strand at 5944.549 kb on + strand at 5944.549 kb on + strand at 5944.549 kb on + strand at 5944.576 kb on - strand at 5944.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 5,941,631 + PP_5722 0.40 +0.5 5,941,632 - PP_5722 0.41 -1.3 5,941,642 + PP_5722 0.43 +0.5 5,941,643 - PP_5722 0.43 -1.2 5,941,690 + PP_5722 0.54 -0.4 5,941,690 + PP_5722 0.54 -2.0 5,941,690 + PP_5722 0.54 +0.0 5,941,691 - PP_5722 0.54 -0.2 5,941,691 - PP_5722 0.54 -0.9 5,941,739 + PP_5722 0.65 +0.4 5,941,752 + PP_5722 0.68 -1.2 5,941,761 + PP_5722 0.70 -2.0 5,941,761 + PP_5722 0.70 -0.1 5,941,761 + PP_5722 0.70 -1.2 5,941,762 - PP_5722 0.71 +0.5 5,941,855 - -1.1 5,941,855 - -0.0 5,941,855 - -0.4 5,941,928 + +0.4 5,941,928 + -0.2 5,941,928 + +1.4 5,941,929 - -1.5 5,941,929 - -2.0 5,941,929 - +1.7 5,941,929 - +0.1 5,941,969 - +0.4 5,941,990 + +1.2 5,941,990 + -0.2 5,941,990 + +0.2 5,941,990 + -0.2 5,941,991 - +0.2 5,941,991 - +1.4 5,941,991 - -1.1 5,942,002 - +0.8 5,942,024 - +0.1 5,942,024 - -0.1 5,942,024 - +0.8 5,942,249 - PP_5209 0.42 -2.0 5,942,249 - PP_5209 0.42 -1.4 5,942,249 - PP_5209 0.42 +0.2 5,942,249 - PP_5209 0.42 +0.7 5,942,301 - PP_5209 0.54 -1.0 5,942,301 - PP_5209 0.54 -0.8 5,942,333 + PP_5209 0.61 +0.6 5,942,333 + PP_5209 0.61 +0.8 5,942,333 + PP_5209 0.61 -0.3 5,942,333 + PP_5209 0.61 -1.0 5,942,334 - PP_5209 0.61 +0.3 5,942,367 - PP_5209 0.68 +1.4 5,942,367 - PP_5209 0.68 +0.9 5,942,367 - PP_5209 0.68 -0.6 5,942,473 + +0.6 5,942,473 + -0.6 5,942,474 - -0.7 5,942,490 + -0.6 5,942,490 + +0.0 5,942,490 + -0.1 5,942,491 - -1.0 5,942,577 + -0.6 5,942,578 - -0.1 5,942,578 - -0.5 5,942,578 - +0.1 5,942,583 + +0.5 5,942,608 - -0.9 5,942,765 + PP_5210 0.15 -2.5 5,942,765 + PP_5210 0.15 -0.4 5,942,766 - PP_5210 0.15 -0.2 5,942,766 - PP_5210 0.15 +0.6 5,942,921 + PP_5210 0.31 -0.7 5,942,921 + PP_5210 0.31 -1.7 5,942,921 + PP_5210 0.31 +1.7 5,942,921 + PP_5210 0.31 +0.3 5,942,922 - PP_5210 0.31 +0.9 5,942,922 - PP_5210 0.31 +0.1 5,942,984 + PP_5210 0.38 -0.2 5,942,984 + PP_5210 0.38 +0.7 5,942,984 + PP_5210 0.38 -0.4 5,942,985 - PP_5210 0.38 -0.3 5,943,048 + PP_5210 0.44 +0.3 5,943,185 + PP_5210 0.58 +0.7 5,943,186 - PP_5210 0.58 -0.7 5,943,251 + PP_5210 0.65 +0.2 5,943,251 + PP_5210 0.65 -1.5 5,943,251 + PP_5210 0.65 -0.2 5,943,251 + PP_5210 0.65 +0.3 5,943,251 + PP_5210 0.65 +0.6 5,943,252 - PP_5210 0.65 -0.6 5,943,252 - PP_5210 0.65 +0.5 5,943,252 - PP_5210 0.65 -0.5 5,943,252 - PP_5210 0.65 -0.2 5,943,252 - PP_5210 0.65 -0.2 5,943,252 - PP_5210 0.65 +0.9 5,943,252 - PP_5210 0.65 +0.1 5,943,509 + -0.1 5,943,509 + +0.7 5,943,510 - -0.1 5,943,510 - -1.2 5,943,649 + -0.1 5,943,774 + PP_5211 0.17 -0.3 5,943,774 + PP_5211 0.17 -0.4 5,943,775 - PP_5211 0.18 +0.8 5,943,853 - PP_5211 0.32 +0.0 5,943,853 - PP_5211 0.32 +0.6 5,944,101 + PP_5211 0.76 -1.0 5,944,101 + PP_5211 0.76 +0.1 5,944,102 - PP_5211 0.76 -0.3 5,944,102 - PP_5211 0.76 -0.0 5,944,124 + PP_5211 0.80 +0.5 5,944,182 + +0.0 5,944,258 + +0.7 5,944,258 + +0.5 5,944,309 + +0.1 5,944,310 - +0.1 5,944,327 + -0.3 5,944,328 - -0.3 5,944,328 - +0.4 5,944,341 + -0.2 5,944,354 + +0.6 5,944,354 + +0.0 5,944,355 - +0.2 5,944,355 - -0.5 5,944,363 - +0.4 5,944,377 - +0.6 5,944,400 - -1.2 5,944,423 + +0.9 5,944,423 + -1.2 5,944,423 + -0.1 5,944,423 + -1.0 5,944,423 + -0.5 5,944,423 + +0.5 5,944,423 + -0.6 5,944,424 - +0.8 5,944,424 - -0.3 5,944,424 - -0.3 5,944,424 - -0.6 5,944,424 - -1.2 5,944,443 - -1.0 5,944,493 + -0.7 5,944,494 - -0.2 5,944,494 - -0.3 5,944,517 + -1.4 5,944,539 + -0.4 5,944,547 + -0.4 5,944,549 + -0.4 5,944,549 + +0.7 5,944,549 + +0.2 5,944,576 - +1.5 5,944,576 - -0.9
Or see this region's nucleotide sequence