Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0846 and PP_0847 are separated by 3 nucleotides PP_0847 and PP_0848 are separated by 10 nucleotides PP_0848 and PP_0849 are separated by 88 nucleotides PP_0849 and PP_0850 are separated by 28 nucleotides
PP_0846: PP_0846 - DnaK-like molecular chaperone specific for IscU, at 981,124 to 982,986
_0846
PP_0847: PP_0847 - ferredoxin, at 982,990 to 983,331
_0847
PP_0848: PP_0848 - donor of Fe2+ and regulator of cysteine desulfurase activity, at 983,342 to 983,542
_0848
PP_0849: PP_0849 - Nucleoside diphosphate kinase, at 983,631 to 984,056
_0849
PP_0850: PP_0850 - Dual-specificity RNA methyltransferase RlmN, at 984,085 to 985,230
_0850
Position (kb) 983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 982.727 kb on + strand, within PP_0846 at 982.727 kb on + strand, within PP_0846 at 982.727 kb on + strand, within PP_0846 at 983.339 kb on + strand at 983.339 kb on + strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.365 kb on - strand, within PP_0848 at 983.417 kb on + strand, within PP_0848 at 983.417 kb on + strand, within PP_0848 at 983.418 kb on - strand, within PP_0848 at 983.418 kb on - strand, within PP_0848 at 983.540 kb on + strand at 983.540 kb on + strand at 983.583 kb on + strand at 983.583 kb on + strand at 984.043 kb on + strand at 984.043 kb on + strand at 984.044 kb on - strand at 984.067 kb on - strand at 984.096 kb on + strand at 984.096 kb on + strand at 984.156 kb on + strand at 984.156 kb on + strand at 984.242 kb on + strand, within PP_0850 at 984.242 kb on + strand, within PP_0850 at 984.242 kb on + strand, within PP_0850 at 984.243 kb on - strand, within PP_0850 at 984.243 kb on - strand, within PP_0850 at 984.333 kb on + strand, within PP_0850 at 984.333 kb on + strand, within PP_0850 at 984.334 kb on - strand, within PP_0850 at 984.379 kb on + strand, within PP_0850 at 984.379 kb on + strand, within PP_0850 at 984.380 kb on - strand, within PP_0850 at 984.380 kb on - strand, within PP_0850
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 982,727 + PP_0846 0.86 +0.2 982,727 + PP_0846 0.86 +1.4 982,727 + PP_0846 0.86 +0.7 983,339 + -0.4 983,339 + -0.7 983,340 - -0.1 983,340 - +0.2 983,340 - -0.5 983,340 - -1.9 983,340 - +0.7 983,365 - PP_0848 0.11 -0.1 983,417 + PP_0848 0.37 +1.1 983,417 + PP_0848 0.37 -0.0 983,418 - PP_0848 0.38 -1.9 983,418 - PP_0848 0.38 +2.5 983,540 + -0.9 983,540 + +1.4 983,583 + -1.4 983,583 + -1.4 984,043 + -2.2 984,043 + +0.4 984,044 - -1.5 984,067 - -2.5 984,096 + -1.1 984,096 + -2.4 984,156 + -1.1 984,156 + -2.4 984,242 + PP_0850 0.14 +0.8 984,242 + PP_0850 0.14 +0.3 984,242 + PP_0850 0.14 +0.8 984,243 - PP_0850 0.14 -3.0 984,243 - PP_0850 0.14 -0.2 984,333 + PP_0850 0.22 -0.5 984,333 + PP_0850 0.22 -0.0 984,334 - PP_0850 0.22 -1.7 984,379 + PP_0850 0.26 +0.2 984,379 + PP_0850 0.26 -0.9 984,380 - PP_0850 0.26 -1.9 984,380 - PP_0850 0.26 +0.2
Or see this region's nucleotide sequence