Strain Fitness in Pseudomonas putida KT2440 around PP_5365

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
6,113,414	+		PP_5364	0.38	-0.4
6,113,414	+		PP_5364	0.38	+0.3
6,113,415	-		PP_5364	0.38	+0.9
6,113,609	+		PP_5364	0.51	+0.0
6,113,656	-		PP_5364	0.54	-0.3
6,113,711	+		PP_5364	0.58	-1.1
6,113,712	-		PP_5364	0.58	+0.4
6,113,712	-		PP_5364	0.58	-1.9
6,113,752	+		PP_5364	0.61	-1.2
6,113,752	+		PP_5364	0.61	+0.5
6,113,752	+		PP_5364	0.61	+1.2
6,113,752	+		PP_5364	0.61	-1.1
6,113,753	-		PP_5364	0.61	-1.5
6,113,753	-		PP_5364	0.61	+0.3
6,113,753	-		PP_5364	0.61	-2.4
6,113,753	-		PP_5364	0.61	-0.0
6,113,883	-		PP_5364	0.70	+1.0
6,113,931	+		PP_5364	0.73	+1.4
6,113,932	-		PP_5364	0.73	-1.4
6,113,987	+		PP_5364	0.77	+1.8
6,113,987	+		PP_5364	0.77	-1.2
6,113,987	+		PP_5364	0.77	+0.4
6,114,037	+		PP_5364	0.81	-0.4
6,114,037	+		PP_5364	0.81	+2.2
6,114,037	+		PP_5364	0.81	-1.6
6,114,037	+		PP_5364	0.81	+0.2
6,114,037	+		PP_5364	0.81	-0.8
6,114,037	+		PP_5364	0.81	+1.3
6,114,037	+		PP_5364	0.81	+0.3
6,114,037	+		PP_5364	0.81	+1.1
6,114,037	+		PP_5364	0.81	-0.8
6,114,037	+		PP_5364	0.81	+0.2
6,114,038	-		PP_5364	0.81	+1.3
6,114,038	-		PP_5364	0.81	+0.3
6,114,038	-		PP_5364	0.81	+0.6
6,114,038	-		PP_5364	0.81	-0.1
6,114,038	-		PP_5364	0.81	-0.7
6,114,038	-		PP_5364	0.81	+0.1
6,114,038	-		PP_5364	0.81	-0.0
6,114,038	-		PP_5364	0.81	-0.6
6,114,038	-		PP_5364	0.81	-2.4
6,114,038	-		PP_5364	0.81	+0.6
6,114,038	-		PP_5364	0.81	-0.1
6,114,038	-		PP_5364	0.81	+0.3
6,114,155	-		PP_5364	0.89	-1.6
6,114,236	-				+0.4
6,114,256	+				+0.3
6,114,314	+				-0.5
6,114,315	-				+0.6
6,114,375	+				-1.6
6,114,375	+				-0.8
6,114,375	+				+0.3
6,114,375	+				-0.5
6,114,376	-				+0.6
6,114,376	-				+0.2
6,114,408	-				-0.0
6,114,453	-				+0.2
6,114,470	-				-0.2
6,114,506	+				+1.2
6,114,506	+				+0.7
6,114,507	-				+1.3
6,114,507	-				-2.2
6,114,524	+				+0.8
6,114,525	-				-0.1
6,114,525	-				+0.8
6,114,618	+		PP_5365	0.17	-1.0
6,114,619	-		PP_5365	0.17	+1.3
6,114,619	-		PP_5365	0.17	-0.1
6,114,623	+		PP_5365	0.17	+1.1
6,114,624	-		PP_5365	0.17	+2.2
6,114,624	-		PP_5365	0.17	-0.4
6,114,652	+		PP_5365	0.20	+0.4
6,114,653	-		PP_5365	0.20	+1.2
6,114,676	-		PP_5365	0.21	-0.4
6,114,721	+		PP_5365	0.25	-0.2
6,114,721	+		PP_5365	0.25	+0.2
6,114,721	+		PP_5365	0.25	+2.2
6,114,722	-		PP_5365	0.25	+1.3
6,114,722	-		PP_5365	0.25	+0.8
6,114,722	-		PP_5365	0.25	-0.9
6,114,722	-		PP_5365	0.25	-1.0
6,114,725	+		PP_5365	0.25	+1.5
6,114,725	+		PP_5365	0.25	-0.6
6,114,726	-		PP_5365	0.25	+1.1
6,114,726	-		PP_5365	0.25	+1.2
6,114,726	-		PP_5365	0.25	+0.3
6,114,726	-		PP_5365	0.25	+1.7
6,114,726	-		PP_5365	0.25	-0.6
6,114,845	+		PP_5365	0.35	+1.6
6,114,846	-		PP_5365	0.35	-0.6
6,114,882	+		PP_5365	0.37	+0.9
6,114,882	+		PP_5365	0.37	+0.1
6,114,883	-		PP_5365	0.38	-0.2
6,114,883	-		PP_5365	0.38	+1.5
6,115,021	-		PP_5365	0.48	-1.4
6,115,044	-		PP_5365	0.50	+0.3
6,115,100	+		PP_5365	0.54	-0.6
6,115,100	+		PP_5365	0.54	+1.0
6,115,170	+		PP_5365	0.60	-0.4
6,115,171	-		PP_5365	0.60	+1.0
6,115,171	-		PP_5365	0.60	-0.7
6,115,191	-		PP_5365	0.61	-0.1
6,115,191	-		PP_5365	0.61	+0.7
6,115,202	+		PP_5365	0.62	+1.1
6,115,202	+		PP_5365	0.62	+0.4
6,115,203	-		PP_5365	0.62	+1.4
6,115,203	-		PP_5365	0.62	-0.1
6,115,232	+		PP_5365	0.65	+2.7
6,115,232	+		PP_5365	0.65	-0.6
6,115,233	-		PP_5365	0.65	+0.1
6,115,253	+		PP_5365	0.66	-0.4
6,115,254	-		PP_5365	0.66	+1.4
6,115,254	-		PP_5365	0.66	-1.0
6,115,254	-		PP_5365	0.66	-0.8
6,115,254	-		PP_5365	0.66	+1.2
6,115,254	-		PP_5365	0.66	+0.8
6,115,254	-		PP_5365	0.66	-0.3
6,115,420	+		PP_5365	0.79	-1.1
6,115,420	+		PP_5365	0.79	+0.5
6,115,421	-		PP_5365	0.79	+2.3
6,115,421	-		PP_5365	0.79	+0.2
6,115,495	-		PP_5365	0.85	+1.8
6,115,495	-		PP_5365	0.85	+1.1
6,115,605	-				+1.4
6,115,605	-				-0.4
6,115,605	-				+1.0
6,115,621	+				+0.6
6,115,621	+				+0.8
6,115,621	+				-1.6
6,115,622	-				-0.4
6,115,649	+				+0.1
6,115,649	+				-0.1
6,115,649	+				+1.2
6,115,650	-				+0.3
6,115,650	-				-0.4
6,115,661	-				-0.9
6,115,661	-				+0.8
6,115,661	-				+0.2
6,115,692	-				-0.7
6,115,707	+				-1.2
6,115,748	+				-0.0
6,115,749	-				+1.1
6,115,749	-				+0.3
6,115,772	+				+0.3
6,115,772	+				+0.3
6,115,772	+				-1.7
6,115,772	+				+0.1
6,115,772	+				-1.1
6,115,773	-				-1.2
6,115,773	-				-0.3
6,115,773	-				+0.7
6,115,773	-				+0.3
6,115,773	-				-0.0
6,115,773	-				-0.8
6,115,773	-				+0.2
6,115,837	+				+0.2
6,115,838	-				-0.1
6,115,970	-		PP_5366	0.13	+0.7
6,116,015	+		PP_5366	0.16	-1.1
6,116,016	-		PP_5366	0.16	+0.1
6,116,016	-		PP_5366	0.16	-0.0
6,116,016	-		PP_5366	0.16	-0.1
6,116,090	-		PP_5366	0.21	-1.3
6,116,404	+		PP_5366	0.44	-1.3
6,116,499	+		PP_5366	0.50	-0.3
6,116,500	-		PP_5366	0.51	+0.2
6,116,590	+		PP_5366	0.57	+0.6
6,116,590	+		PP_5366	0.57	+0.1
6,116,590	+		PP_5366	0.57	+0.0
6,116,590	+		PP_5366	0.57	-0.4
6,116,591	-		PP_5366	0.57	+0.6
6,116,621	-		PP_5366	0.59	-0.8
6,116,622	+		PP_5366	0.59	+0.1
6,116,622	+		PP_5366	0.59	+0.0
6,116,623	-		PP_5366	0.59	-0.1
6,116,623	-		PP_5366	0.59	-1.4
6,116,623	-		PP_5366	0.59	+0.2