Strain Fitness in Pseudomonas putida KT2440 around PP_1075

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1074 and PP_1075 are separated by 101 nucleotidesPP_1075 and PP_1076 are separated by 51 nucleotides PP_1074: PP_1074 - DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate, at 1,232,929 to 1,233,684 _1074 PP_1075: PP_1075 - glycerol kinase, at 1,233,786 to 1,235,285 _1075 PP_1076: PP_1076 - aquaglyceroporin, at 1,235,337 to 1,236,188 _1076 Position (kb) 1233 1234 1235 1236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1232.974 kb on - strandat 1233.322 kb on - strand, within PP_1074at 1233.322 kb on - strand, within PP_1074at 1233.431 kb on - strand, within PP_1074at 1233.485 kb on + strand, within PP_1074at 1233.512 kb on + strand, within PP_1074at 1233.513 kb on - strand, within PP_1074at 1233.629 kb on + strandat 1233.630 kb on - strandat 1233.630 kb on - strandat 1233.730 kb on - strandat 1233.750 kb on + strandat 1233.784 kb on + strandat 1233.784 kb on + strandat 1233.784 kb on + strandat 1233.784 kb on + strandat 1233.785 kb on - strandat 1233.785 kb on - strandat 1233.785 kb on - strandat 1233.785 kb on - strandat 1233.785 kb on - strandat 1233.844 kb on + strandat 1233.844 kb on + strandat 1233.844 kb on + strandat 1233.844 kb on + strandat 1233.958 kb on + strand, within PP_1075at 1233.959 kb on - strand, within PP_1075at 1234.136 kb on - strand, within PP_1075at 1234.173 kb on + strand, within PP_1075at 1234.174 kb on - strand, within PP_1075at 1234.174 kb on - strand, within PP_1075at 1234.216 kb on + strand, within PP_1075at 1234.216 kb on + strand, within PP_1075at 1234.265 kb on - strand, within PP_1075at 1234.359 kb on - strand, within PP_1075at 1234.359 kb on - strand, within PP_1075at 1234.359 kb on - strand, within PP_1075at 1234.393 kb on + strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.498 kb on + strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.581 kb on + strand, within PP_1075at 1234.581 kb on + strand, within PP_1075at 1234.582 kb on - strand, within PP_1075at 1234.604 kb on - strand, within PP_1075at 1234.754 kb on + strand, within PP_1075at 1234.755 kb on - strand, within PP_1075at 1234.871 kb on - strand, within PP_1075at 1234.906 kb on + strand, within PP_1075at 1234.906 kb on + strand, within PP_1075at 1234.907 kb on - strand, within PP_1075at 1234.982 kb on - strand, within PP_1075at 1235.158 kb on + strandat 1235.159 kb on - strandat 1235.186 kb on + strandat 1235.186 kb on + strandat 1235.186 kb on + strandat 1235.187 kb on - strandat 1235.190 kb on + strandat 1235.190 kb on + strandat 1235.190 kb on + strandat 1235.190 kb on + strandat 1235.191 kb on - strandat 1235.191 kb on - strandat 1235.238 kb on - strandat 1235.260 kb on + strandat 1235.260 kb on + strandat 1235.260 kb on + strandat 1235.260 kb on + strandat 1235.261 kb on - strandat 1235.261 kb on - strandat 1235.267 kb on + strandat 1235.267 kb on + strandat 1235.268 kb on - strandat 1235.268 kb on - strandat 1235.291 kb on + strandat 1235.291 kb on + strandat 1235.306 kb on + strandat 1235.352 kb on - strandat 1235.429 kb on - strand, within PP_1076at 1235.767 kb on + strand, within PP_1076at 1235.767 kb on + strand, within PP_1076at 1235.857 kb on + strand, within PP_1076at 1235.857 kb on + strand, within PP_1076at 1235.857 kb on + strand, within PP_1076at 1235.858 kb on - strand, within PP_1076at 1235.858 kb on - strand, within PP_1076at 1235.866 kb on + strand, within PP_1076at 1235.898 kb on + strand, within PP_1076at 1235.898 kb on + strand, within PP_1076at 1235.898 kb on + strand, within PP_1076at 1235.914 kb on + strand, within PP_1076at 1235.914 kb on + strand, within PP_1076at 1235.914 kb on + strand, within PP_1076at 1235.914 kb on + strand, within PP_1076at 1235.915 kb on - strand, within PP_1076at 1235.915 kb on - strand, within PP_1076at 1235.915 kb on - strand, within PP_1076at 1236.010 kb on + strand, within PP_1076at 1236.011 kb on - strand, within PP_1076at 1236.011 kb on - strand, within PP_1076at 1236.044 kb on + strand, within PP_1076at 1236.045 kb on - strand, within PP_1076at 1236.045 kb on - strand, within PP_1076at 1236.190 kb on + strandat 1236.190 kb on + strandat 1236.190 kb on + strandat 1236.190 kb on + strandat 1236.190 kb on + strandat 1236.191 kb on - strandat 1236.191 kb on - strandat 1236.191 kb on - strandat 1236.191 kb on - strandat 1236.249 kb on - strandat 1236.272 kb on + strandat 1236.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
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1,232,974 - -0.8
1,233,322 - PP_1074 0.52 +0.5
1,233,322 - PP_1074 0.52 -2.8
1,233,431 - PP_1074 0.66 -0.3
1,233,485 + PP_1074 0.74 -0.3
1,233,512 + PP_1074 0.77 -0.4
1,233,513 - PP_1074 0.77 -1.5
1,233,629 + -0.0
1,233,630 - -0.3
1,233,630 - -0.3
1,233,730 - +0.9
1,233,750 + +0.6
1,233,784 + +0.2
1,233,784 + +1.9
1,233,784 + -0.1
1,233,784 + +0.1
1,233,785 - -0.6
1,233,785 - +0.8
1,233,785 - -0.9
1,233,785 - -0.0
1,233,785 - +0.1
1,233,844 + +1.8
1,233,844 + -0.1
1,233,844 + +1.1
1,233,844 + -0.0
1,233,958 + PP_1075 0.11 -0.7
1,233,959 - PP_1075 0.12 +0.9
1,234,136 - PP_1075 0.23 -1.0
1,234,173 + PP_1075 0.26 -1.0
1,234,174 - PP_1075 0.26 -0.4
1,234,174 - PP_1075 0.26 +0.9
1,234,216 + PP_1075 0.29 -0.4
1,234,216 + PP_1075 0.29 +4.1
1,234,265 - PP_1075 0.32 +0.3
1,234,359 - PP_1075 0.38 +0.6
1,234,359 - PP_1075 0.38 +1.8
1,234,359 - PP_1075 0.38 +0.4
1,234,393 + PP_1075 0.40 +0.2
1,234,394 - PP_1075 0.41 +1.7
1,234,394 - PP_1075 0.41 -1.0
1,234,394 - PP_1075 0.41 +0.1
1,234,498 + PP_1075 0.47 +1.3
1,234,499 - PP_1075 0.48 -0.7
1,234,499 - PP_1075 0.48 +5.1
1,234,499 - PP_1075 0.48 -0.1
1,234,502 + PP_1075 0.48 +0.9
1,234,502 + PP_1075 0.48 +0.4
1,234,502 + PP_1075 0.48 +1.8
1,234,502 + PP_1075 0.48 -0.1
1,234,503 - PP_1075 0.48 +2.3
1,234,503 - PP_1075 0.48 -1.2
1,234,503 - PP_1075 0.48 +0.4
1,234,503 - PP_1075 0.48 -0.3
1,234,503 - PP_1075 0.48 +0.7
1,234,503 - PP_1075 0.48 +0.7
1,234,503 - PP_1075 0.48 +0.3
1,234,581 + PP_1075 0.53 -0.2
1,234,581 + PP_1075 0.53 -0.1
1,234,582 - PP_1075 0.53 +1.7
1,234,604 - PP_1075 0.55 +0.7
1,234,754 + PP_1075 0.65 +1.8
1,234,755 - PP_1075 0.65 -1.3
1,234,871 - PP_1075 0.72 +0.2
1,234,906 + PP_1075 0.75 +2.1
1,234,906 + PP_1075 0.75 +1.5
1,234,907 - PP_1075 0.75 +1.5
1,234,982 - PP_1075 0.80 +1.3
1,235,158 + +2.9
1,235,159 - -1.4
1,235,186 + +1.0
1,235,186 + +1.1
1,235,186 + -1.8
1,235,187 - -0.8
1,235,190 + +2.5
1,235,190 + -1.4
1,235,190 + +0.8
1,235,190 + -0.9
1,235,191 - +1.7
1,235,191 - -1.5
1,235,238 - -2.9
1,235,260 + +1.1
1,235,260 + +0.1
1,235,260 + +2.7
1,235,260 + +0.5
1,235,261 - +0.4
1,235,261 - +1.3
1,235,267 + +1.1
1,235,267 + +3.7
1,235,268 - +1.5
1,235,268 - +2.1
1,235,291 + +1.6
1,235,291 + +4.1
1,235,306 + +0.4
1,235,352 - +0.1
1,235,429 - PP_1076 0.11 -0.5
1,235,767 + PP_1076 0.50 +1.2
1,235,767 + PP_1076 0.50 +0.3
1,235,857 + PP_1076 0.61 +0.7
1,235,857 + PP_1076 0.61 +0.5
1,235,857 + PP_1076 0.61 +1.2
1,235,858 - PP_1076 0.61 +2.1
1,235,858 - PP_1076 0.61 -0.1
1,235,866 + PP_1076 0.62 -0.9
1,235,898 + PP_1076 0.66 +1.1
1,235,898 + PP_1076 0.66 +4.4
1,235,898 + PP_1076 0.66 +0.9
1,235,914 + PP_1076 0.68 +1.1
1,235,914 + PP_1076 0.68 +1.8
1,235,914 + PP_1076 0.68 +0.2
1,235,914 + PP_1076 0.68 +3.7
1,235,915 - PP_1076 0.68 +0.5
1,235,915 - PP_1076 0.68 -0.6
1,235,915 - PP_1076 0.68 -0.2
1,236,010 + PP_1076 0.79 -0.5
1,236,011 - PP_1076 0.79 +1.3
1,236,011 - PP_1076 0.79 -1.4
1,236,044 + PP_1076 0.83 +0.1
1,236,045 - PP_1076 0.83 -1.2
1,236,045 - PP_1076 0.83 +0.5
1,236,190 + -0.2
1,236,190 + +0.6
1,236,190 + -0.6
1,236,190 + +1.8
1,236,190 + +2.1
1,236,191 - +2.1
1,236,191 - +0.9
1,236,191 - +0.9
1,236,191 - -0.3
1,236,249 - +0.5
1,236,272 + +1.5
1,236,273 - -0.3

Or see this region's nucleotide sequence