Strain Fitness in Pseudomonas putida KT2440 around PP_0283

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0281 and PP_0282 are separated by 54 nucleotidesPP_0282 and PP_0283 are separated by 11 nucleotidesPP_0283 and PP_5438 are separated by 77 nucleotidesPP_5438 and PP_0284 are separated by 377 nucleotides PP_0281: PP_0281 - Amino acid ABC transporter, permease protein, at 338,568 to 339,260 _0281 PP_0282: PP_0282 - L-arginine ABC transporter - periplasmic binding subunit, at 339,315 to 340,067 _0282 PP_0283: PP_0283 - Arginine/ornithine transport ATP-binding protein AotP, at 340,079 to 340,852 _0283 PP_5438: PP_5438 - conserved protein of unknown function, at 340,930 to 341,106 _5438 PP_0284: PP_0284 - gamma-aminobutyrate permease, at 341,484 to 342,869 _0284 Position (kb) 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 339.097 kb on + strand, within PP_0281at 339.255 kb on - strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.338 kb on - strandat 339.338 kb on - strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.359 kb on - strandat 339.362 kb on + strandat 339.363 kb on - strandat 339.514 kb on + strand, within PP_0282at 339.514 kb on + strand, within PP_0282at 339.515 kb on - strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.548 kb on + strand, within PP_0282at 339.571 kb on + strand, within PP_0282at 339.593 kb on - strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.632 kb on - strand, within PP_0282at 339.671 kb on + strand, within PP_0282at 339.671 kb on + strand, within PP_0282at 339.672 kb on - strand, within PP_0282at 339.742 kb on + strand, within PP_0282at 339.742 kb on + strand, within PP_0282at 339.743 kb on - strand, within PP_0282at 339.743 kb on - strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.746 kb on - strand, within PP_0282at 339.860 kb on + strand, within PP_0282at 340.057 kb on + strandat 340.058 kb on - strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.240 kb on + strand, within PP_0283at 340.267 kb on + strand, within PP_0283at 340.273 kb on + strand, within PP_0283at 340.274 kb on - strand, within PP_0283at 340.405 kb on - strand, within PP_0283at 340.405 kb on - strand, within PP_0283at 340.422 kb on + strand, within PP_0283at 340.717 kb on + strand, within PP_0283at 340.717 kb on + strand, within PP_0283at 340.718 kb on - strand, within PP_0283at 340.785 kb on - strandat 340.803 kb on + strandat 340.917 kb on + strandat 340.917 kb on + strandat 340.917 kb on + strandat 340.918 kb on - strandat 340.918 kb on - strandat 340.923 kb on - strandat 340.923 kb on - strandat 340.931 kb on + strandat 340.932 kb on - strandat 340.999 kb on + strand, within PP_5438at 341.115 kb on + strandat 341.115 kb on + strandat 341.138 kb on + strandat 341.169 kb on - strandat 341.181 kb on + strandat 341.181 kb on + strandat 341.181 kb on + strandat 341.182 kb on - strandat 341.226 kb on + strandat 341.254 kb on - strandat 341.262 kb on - strandat 341.331 kb on + strandat 341.332 kb on - strandat 341.332 kb on - strandat 341.332 kb on - strandat 341.417 kb on + strandat 341.418 kb on - strandat 341.418 kb on - strandat 341.442 kb on - strandat 341.468 kb on + strandat 341.476 kb on + strandat 341.582 kb on - strandat 341.582 kb on - strandat 341.631 kb on + strand, within PP_0284at 341.631 kb on + strand, within PP_0284at 341.632 kb on - strand, within PP_0284at 341.632 kb on - strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.717 kb on + strand, within PP_0284at 341.717 kb on + strand, within PP_0284at 341.718 kb on - strand, within PP_0284at 341.721 kb on + strand, within PP_0284at 341.721 kb on + strand, within PP_0284at 341.722 kb on - strand, within PP_0284at 341.722 kb on - strand, within PP_0284at 341.772 kb on + strand, within PP_0284at 341.773 kb on - strand, within PP_0284

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
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339,097 + PP_0281 0.76 -0.9
339,255 - -1.9
339,337 + -1.8
339,337 + -1.3
339,337 + +0.8
339,337 + -0.1
339,338 - +0.4
339,338 - -0.9
339,358 + -0.8
339,358 + +0.9
339,358 + -0.2
339,358 + +0.1
339,359 - -0.5
339,362 + +1.7
339,363 - +0.9
339,514 + PP_0282 0.26 +0.0
339,514 + PP_0282 0.26 -0.2
339,515 - PP_0282 0.27 +0.4
339,523 + PP_0282 0.28 -0.3
339,523 + PP_0282 0.28 +0.3
339,523 + PP_0282 0.28 +0.4
339,524 - PP_0282 0.28 -1.2
339,524 - PP_0282 0.28 +1.0
339,524 - PP_0282 0.28 +0.1
339,524 - PP_0282 0.28 +2.7
339,524 - PP_0282 0.28 -1.4
339,548 + PP_0282 0.31 -0.7
339,571 + PP_0282 0.34 -0.2
339,593 - PP_0282 0.37 +0.6
339,631 + PP_0282 0.42 +1.5
339,631 + PP_0282 0.42 -1.2
339,631 + PP_0282 0.42 +0.2
339,631 + PP_0282 0.42 -0.2
339,631 + PP_0282 0.42 +0.9
339,632 - PP_0282 0.42 +0.8
339,671 + PP_0282 0.47 -0.5
339,671 + PP_0282 0.47 -0.6
339,672 - PP_0282 0.47 +0.4
339,742 + PP_0282 0.57 -0.2
339,742 + PP_0282 0.57 +0.0
339,743 - PP_0282 0.57 +0.4
339,743 - PP_0282 0.57 +1.5
339,745 + PP_0282 0.57 -0.3
339,745 + PP_0282 0.57 -0.9
339,745 + PP_0282 0.57 +0.5
339,746 - PP_0282 0.57 -0.4
339,860 + PP_0282 0.72 +0.0
340,057 + +1.5
340,058 - -0.5
340,069 + -0.4
340,069 + -0.2
340,069 + +0.9
340,069 + +0.2
340,070 - +0.3
340,070 - -0.3
340,070 - +0.5
340,070 - -2.6
340,070 - +0.9
340,070 - +1.1
340,070 - +0.1
340,240 + PP_0283 0.21 +0.4
340,267 + PP_0283 0.24 +0.7
340,273 + PP_0283 0.25 +2.1
340,274 - PP_0283 0.25 -2.3
340,405 - PP_0283 0.42 +0.3
340,405 - PP_0283 0.42 +0.6
340,422 + PP_0283 0.44 +1.5
340,717 + PP_0283 0.82 -1.7
340,717 + PP_0283 0.82 +0.8
340,718 - PP_0283 0.83 -0.2
340,785 - +0.2
340,803 + +0.9
340,917 + -2.4
340,917 + -0.3
340,917 + +0.3
340,918 - +0.5
340,918 - +0.5
340,923 - -1.4
340,923 - -2.1
340,931 + -1.4
340,932 - -0.2
340,999 + PP_5438 0.39 -0.3
341,115 + -0.8
341,115 + +0.7
341,138 + +0.4
341,169 - +0.4
341,181 + +0.8
341,181 + +0.0
341,181 + -0.8
341,182 - -0.7
341,226 + -2.2
341,254 - -0.9
341,262 - -0.7
341,331 + +1.8
341,332 - -1.4
341,332 - -0.2
341,332 - -0.7
341,417 + -1.6
341,418 - -0.1
341,418 - +0.4
341,442 - -0.4
341,468 + -0.9
341,476 + +0.8
341,582 - +0.8
341,582 - +0.7
341,631 + PP_0284 0.11 +0.7
341,631 + PP_0284 0.11 -0.9
341,632 - PP_0284 0.11 -0.1
341,632 - PP_0284 0.11 -1.0
341,669 + PP_0284 0.13 +0.9
341,669 + PP_0284 0.13 -0.1
341,669 + PP_0284 0.13 -1.9
341,669 + PP_0284 0.13 +0.9
341,669 + PP_0284 0.13 -0.1
341,669 + PP_0284 0.13 +4.0
341,669 + PP_0284 0.13 -1.3
341,669 + PP_0284 0.13 +1.4
341,670 - PP_0284 0.13 +0.2
341,670 - PP_0284 0.13 +0.3
341,670 - PP_0284 0.13 +0.2
341,670 - PP_0284 0.13 +1.0
341,670 - PP_0284 0.13 -0.8
341,670 - PP_0284 0.13 -0.1
341,670 - PP_0284 0.13 -0.3
341,717 + PP_0284 0.17 -2.9
341,717 + PP_0284 0.17 +0.7
341,718 - PP_0284 0.17 -0.1
341,721 + PP_0284 0.17 -0.6
341,721 + PP_0284 0.17 -1.3
341,722 - PP_0284 0.17 +0.1
341,722 - PP_0284 0.17 -0.8
341,772 + PP_0284 0.21 -0.1
341,773 - PP_0284 0.21 +0.5

Or see this region's nucleotide sequence