Strain Fitness in Pseudomonas putida KT2440 around PP_3717

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3716 and PP_3717 are separated by 132 nucleotidesPP_3717 and PP_3718 overlap by 4 nucleotides PP_3716: PP_3716 - HTH-type transcriptional regulator, at 4,238,385 to 4,239,257 _3716 PP_3717: PP_3717 - Transcriptional regulator, LuxR family, at 4,239,390 to 4,240,289 _3717 PP_3718: PP_3718 - putative aminotransferase, at 4,240,286 to 4,241,698 _3718 Position (kb) 4239 4240 4241Strain fitness (log2 ratio) -2 -1 0 1 2at 4238.406 kb on + strandat 4238.574 kb on + strand, within PP_3716at 4238.682 kb on - strand, within PP_3716at 4238.688 kb on + strand, within PP_3716at 4238.688 kb on + strand, within PP_3716at 4238.689 kb on - strand, within PP_3716at 4238.689 kb on - strand, within PP_3716at 4238.689 kb on - strand, within PP_3716at 4238.689 kb on - strand, within PP_3716at 4238.979 kb on + strand, within PP_3716at 4238.979 kb on + strand, within PP_3716at 4238.980 kb on - strand, within PP_3716at 4238.980 kb on - strand, within PP_3716at 4238.980 kb on - strand, within PP_3716at 4238.980 kb on - strand, within PP_3716at 4238.980 kb on - strand, within PP_3716at 4239.112 kb on + strand, within PP_3716at 4239.141 kb on + strand, within PP_3716at 4239.253 kb on + strandat 4239.254 kb on - strandat 4239.254 kb on - strandat 4239.281 kb on + strandat 4239.281 kb on + strandat 4239.281 kb on + strandat 4239.282 kb on - strandat 4239.282 kb on - strandat 4239.282 kb on - strandat 4239.282 kb on - strandat 4239.282 kb on - strandat 4239.282 kb on - strandat 4239.282 kb on - strandat 4239.282 kb on - strandat 4239.283 kb on + strandat 4239.283 kb on + strandat 4239.284 kb on - strandat 4239.302 kb on - strandat 4239.314 kb on + strandat 4239.314 kb on + strandat 4239.317 kb on - strandat 4239.317 kb on - strandat 4239.317 kb on - strandat 4239.328 kb on + strandat 4239.328 kb on + strandat 4239.329 kb on - strandat 4239.329 kb on - strandat 4239.329 kb on - strandat 4239.329 kb on - strandat 4239.481 kb on + strand, within PP_3717at 4239.481 kb on + strand, within PP_3717at 4239.481 kb on + strand, within PP_3717at 4239.481 kb on + strand, within PP_3717at 4239.482 kb on - strand, within PP_3717at 4239.482 kb on - strand, within PP_3717at 4239.521 kb on + strand, within PP_3717at 4239.522 kb on - strand, within PP_3717at 4239.522 kb on - strand, within PP_3717at 4239.522 kb on - strand, within PP_3717at 4239.820 kb on + strand, within PP_3717at 4239.820 kb on + strand, within PP_3717at 4239.820 kb on + strand, within PP_3717at 4239.821 kb on - strandat 4239.821 kb on - strand, within PP_3717at 4239.821 kb on - strand, within PP_3717at 4239.821 kb on - strand, within PP_3717at 4239.821 kb on - strand, within PP_3717at 4239.823 kb on + strand, within PP_3717at 4239.824 kb on - strand, within PP_3717at 4239.824 kb on - strand, within PP_3717at 4239.824 kb on - strand, within PP_3717at 4239.854 kb on - strand, within PP_3717at 4239.856 kb on + strand, within PP_3717at 4239.857 kb on - strand, within PP_3717at 4239.857 kb on - strand, within PP_3717at 4239.857 kb on - strand, within PP_3717at 4239.857 kb on - strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.868 kb on + strand, within PP_3717at 4239.869 kb on - strand, within PP_3717at 4239.869 kb on - strand, within PP_3717at 4239.869 kb on - strand, within PP_3717at 4239.869 kb on - strand, within PP_3717at 4239.913 kb on + strand, within PP_3717at 4239.913 kb on + strand, within PP_3717at 4239.914 kb on - strand, within PP_3717at 4239.967 kb on + strand, within PP_3717at 4239.982 kb on + strand, within PP_3717at 4239.982 kb on + strand, within PP_3717at 4239.983 kb on - strand, within PP_3717at 4239.983 kb on - strand, within PP_3717at 4240.030 kb on + strand, within PP_3717at 4240.030 kb on + strand, within PP_3717at 4240.117 kb on + strand, within PP_3717at 4240.117 kb on + strand, within PP_3717at 4240.117 kb on + strand, within PP_3717at 4240.117 kb on + strand, within PP_3717at 4240.245 kb on - strandat 4240.299 kb on + strandat 4240.608 kb on + strand, within PP_3718at 4240.609 kb on - strand, within PP_3718at 4240.704 kb on + strand, within PP_3718at 4240.708 kb on + strand, within PP_3718at 4240.708 kb on + strand, within PP_3718at 4240.709 kb on - strand, within PP_3718at 4240.709 kb on - strand, within PP_3718at 4240.709 kb on - strand, within PP_3718at 4240.798 kb on - strand, within PP_3718at 4240.798 kb on - strand, within PP_3718at 4240.926 kb on + strand, within PP_3718at 4240.926 kb on + strand, within PP_3718at 4240.927 kb on - strand, within PP_3718at 4240.959 kb on + strand, within PP_3718at 4240.959 kb on + strandat 4240.959 kb on + strand, within PP_3718at 4241.116 kb on - strand, within PP_3718at 4241.157 kb on + strand, within PP_3718at 4241.158 kb on - strand, within PP_3718at 4241.235 kb on + strand, within PP_3718at 4241.236 kb on - strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.284 kb on - strand, within PP_3718at 4241.286 kb on + strand, within PP_3718

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
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4,238,406 + +2.0
4,238,574 + PP_3716 0.22 +0.3
4,238,682 - PP_3716 0.34 +0.0
4,238,688 + PP_3716 0.35 +0.1
4,238,688 + PP_3716 0.35 -0.2
4,238,689 - PP_3716 0.35 -1.9
4,238,689 - PP_3716 0.35 -0.4
4,238,689 - PP_3716 0.35 +0.1
4,238,689 - PP_3716 0.35 -1.1
4,238,979 + PP_3716 0.68 -0.2
4,238,979 + PP_3716 0.68 -0.1
4,238,980 - PP_3716 0.68 -0.4
4,238,980 - PP_3716 0.68 +0.2
4,238,980 - PP_3716 0.68 -0.2
4,238,980 - PP_3716 0.68 +0.7
4,238,980 - PP_3716 0.68 +0.5
4,239,112 + PP_3716 0.83 -0.2
4,239,141 + PP_3716 0.87 +1.0
4,239,253 + -0.9
4,239,254 - -0.2
4,239,254 - -0.6
4,239,281 + -0.1
4,239,281 + -0.6
4,239,281 + +0.8
4,239,282 - -0.3
4,239,282 - -0.2
4,239,282 - -0.1
4,239,282 - +0.6
4,239,282 - -0.3
4,239,282 - -0.0
4,239,282 - -0.5
4,239,282 - -0.1
4,239,283 + -1.2
4,239,283 + -0.6
4,239,284 - -0.2
4,239,302 - +0.7
4,239,314 + +0.7
4,239,314 + -0.7
4,239,317 - -0.2
4,239,317 - +0.8
4,239,317 - -0.1
4,239,328 + +0.8
4,239,328 + +0.6
4,239,329 - +0.5
4,239,329 - +0.5
4,239,329 - -1.3
4,239,329 - +0.7
4,239,481 + PP_3717 0.10 -0.8
4,239,481 + PP_3717 0.10 +0.6
4,239,481 + PP_3717 0.10 -0.8
4,239,481 + PP_3717 0.10 -1.3
4,239,482 - PP_3717 0.10 +0.6
4,239,482 - PP_3717 0.10 -2.0
4,239,521 + PP_3717 0.15 -0.7
4,239,522 - PP_3717 0.15 -0.6
4,239,522 - PP_3717 0.15 +0.1
4,239,522 - PP_3717 0.15 -1.0
4,239,820 + PP_3717 0.48 -1.5
4,239,820 + PP_3717 0.48 -0.7
4,239,820 + PP_3717 0.48 +0.2
4,239,821 - +0.5
4,239,821 - PP_3717 0.48 -0.7
4,239,821 - PP_3717 0.48 -0.3
4,239,821 - PP_3717 0.48 -0.0
4,239,821 - PP_3717 0.48 -0.9
4,239,823 + PP_3717 0.48 -0.5
4,239,824 - PP_3717 0.48 -0.8
4,239,824 - PP_3717 0.48 +0.1
4,239,824 - PP_3717 0.48 -1.6
4,239,854 - PP_3717 0.52 -1.0
4,239,856 + PP_3717 0.52 -1.1
4,239,857 - PP_3717 0.52 -1.3
4,239,857 - PP_3717 0.52 +0.9
4,239,857 - PP_3717 0.52 -0.8
4,239,857 - PP_3717 0.52 +0.3
4,239,865 + PP_3717 0.53 -0.7
4,239,865 + PP_3717 0.53 -0.2
4,239,865 + PP_3717 0.53 -0.5
4,239,865 + PP_3717 0.53 +0.2
4,239,865 + PP_3717 0.53 +0.1
4,239,866 - PP_3717 0.53 +0.6
4,239,866 - PP_3717 0.53 -1.4
4,239,866 - PP_3717 0.53 +0.1
4,239,866 - PP_3717 0.53 +0.5
4,239,866 - PP_3717 0.53 +0.2
4,239,868 + PP_3717 0.53 +0.1
4,239,869 - PP_3717 0.53 -0.3
4,239,869 - PP_3717 0.53 -1.2
4,239,869 - PP_3717 0.53 -1.1
4,239,869 - PP_3717 0.53 -0.8
4,239,913 + PP_3717 0.58 -0.2
4,239,913 + PP_3717 0.58 -0.6
4,239,914 - PP_3717 0.58 -0.0
4,239,967 + PP_3717 0.64 +0.5
4,239,982 + PP_3717 0.66 -0.7
4,239,982 + PP_3717 0.66 +0.2
4,239,983 - PP_3717 0.66 -2.1
4,239,983 - PP_3717 0.66 +0.6
4,240,030 + PP_3717 0.71 -1.9
4,240,030 + PP_3717 0.71 -0.3
4,240,117 + PP_3717 0.81 -0.4
4,240,117 + PP_3717 0.81 -0.5
4,240,117 + PP_3717 0.81 +1.7
4,240,117 + PP_3717 0.81 +0.5
4,240,245 - +0.3
4,240,299 + -0.9
4,240,608 + PP_3718 0.23 +0.4
4,240,609 - PP_3718 0.23 -0.1
4,240,704 + PP_3718 0.30 -1.3
4,240,708 + PP_3718 0.30 -1.0
4,240,708 + PP_3718 0.30 -0.1
4,240,709 - PP_3718 0.30 -1.7
4,240,709 - PP_3718 0.30 -0.2
4,240,709 - PP_3718 0.30 -0.6
4,240,798 - PP_3718 0.36 +0.4
4,240,798 - PP_3718 0.36 +0.9
4,240,926 + PP_3718 0.45 +0.3
4,240,926 + PP_3718 0.45 +0.6
4,240,927 - PP_3718 0.45 +0.2
4,240,959 + PP_3718 0.48 +0.4
4,240,959 + -0.9
4,240,959 + PP_3718 0.48 -0.8
4,241,116 - PP_3718 0.59 -0.4
4,241,157 + PP_3718 0.62 -0.2
4,241,158 - PP_3718 0.62 +0.2
4,241,235 + PP_3718 0.67 +0.2
4,241,236 - PP_3718 0.67 +0.8
4,241,283 + PP_3718 0.71 -2.0
4,241,283 + PP_3718 0.71 -0.7
4,241,283 + PP_3718 0.71 -0.2
4,241,284 - PP_3718 0.71 -1.6
4,241,286 + PP_3718 0.71 -1.0

Or see this region's nucleotide sequence