Strain Fitness in Pseudomonas putida KT2440 around PP_1886

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
2,120,264	+		PP_1885	0.60	-0.3
2,120,283	-		PP_1885	0.61	-0.2
2,120,376	+		PP_1885	0.65	+1.3
2,120,376	+		PP_1885	0.65	+0.6
2,120,376	+		PP_1885	0.65	-1.3
2,120,376	+		PP_1885	0.65	-0.0
2,120,627	-				+0.4
2,120,752	+		PP_1885	0.81	+0.5
2,120,753	-		PP_1885	0.81	+0.0
2,120,753	-		PP_1885	0.81	+0.2
2,120,753	-		PP_1885	0.81	-0.0
2,120,766	+		PP_1885	0.81	-1.3
2,120,766	+		PP_1885	0.81	+0.2
2,120,766	+		PP_1885	0.81	-0.3
2,120,767	-		PP_1885	0.81	-0.8
2,120,788	+		PP_1885	0.82	-0.2
2,120,788	+		PP_1885	0.82	+0.3
2,120,788	+		PP_1885	0.82	+0.1
2,120,788	+		PP_1885	0.82	+1.2
2,120,845	+		PP_1885	0.85	-0.2
2,120,845	+		PP_1885	0.85	-0.1
2,120,845	+		PP_1885	0.85	+1.1
2,120,845	+		PP_1885	0.85	+0.4
2,120,845	+		PP_1885	0.85	+0.1
2,120,845	+		PP_1885	0.85	+0.4
2,120,845	+		PP_1885	0.85	+0.2
2,120,845	+		PP_1885	0.85	-2.6
2,120,845	+		PP_1885	0.85	-0.3
2,120,846	-		PP_1885	0.85	+0.1
2,120,846	-		PP_1885	0.85	+0.3
2,120,846	-		PP_1885	0.85	+0.2
2,120,846	-		PP_1885	0.85	+2.2
2,120,846	-		PP_1885	0.85	-0.4
2,120,855	+		PP_1885	0.85	+1.0
2,120,925	+		PP_1885	0.88	+0.2
2,120,925	+		PP_1885	0.88	+0.9
2,120,926	-		PP_1885	0.88	-0.4
2,120,926	-		PP_1885	0.88	+0.4
2,120,926	-		PP_1885	0.88	-0.9
2,120,926	-		PP_1885	0.88	-0.7
2,121,258	+				+0.9
2,121,259	-				-0.1
2,121,287	+				-0.5
2,121,288	-				+0.2
2,121,290	-				-0.1
2,121,326	+				-0.0
2,121,326	+				+0.6
2,121,327	-				+0.0
2,121,327	-				+0.4
2,121,617	+		PP_1886	0.15	+0.7
2,121,803	-		PP_1886	0.22	+0.3
2,121,803	-		PP_1886	0.22	+0.9
2,121,803	-		PP_1886	0.22	-0.8
2,121,863	+		PP_1886	0.24	-0.1
2,121,863	+		PP_1886	0.24	+1.1
2,121,863	+		PP_1886	0.24	-1.4
2,121,944	+		PP_1886	0.26	+0.3
2,121,944	+		PP_1886	0.26	-0.1
2,121,944	+		PP_1886	0.26	-0.4
2,121,945	-		PP_1886	0.26	+0.6
2,121,966	-		PP_1886	0.27	+0.2
2,122,084	+		PP_1886	0.31	-0.7
2,122,200	-		PP_1886	0.35	+0.2
2,122,364	+		PP_1886	0.41	+0.8
2,122,364	+		PP_1886	0.41	+0.0
2,122,365	-		PP_1886	0.41	-0.8
2,122,366	+		PP_1886	0.41	+0.4
2,122,366	+		PP_1886	0.41	+0.8
2,122,366	+		PP_1886	0.41	+0.4
2,122,366	+		PP_1886	0.41	-0.5
2,122,366	+		PP_1886	0.41	+1.0
2,122,366	+		PP_1886	0.41	-0.9
2,122,367	-		PP_1886	0.41	-1.4
2,122,367	-		PP_1886	0.41	+0.8
2,122,367	-		PP_1886	0.41	-0.6
2,122,367	-		PP_1886	0.41	+1.2
2,122,367	-		PP_1886	0.41	-0.5
2,122,367	-		PP_1886	0.41	+0.2
2,122,367	-		PP_1886	0.41	-1.4
2,122,385	+		PP_1886	0.41	+1.6
2,122,385	+		PP_1886	0.41	+1.0
2,122,385	+		PP_1886	0.41	-0.2
2,122,386	-		PP_1886	0.41	+0.2
2,122,386	-		PP_1886	0.41	-0.2
2,122,386	-		PP_1886	0.41	-1.4
2,122,386	-		PP_1886	0.41	-0.7
2,122,386	-		PP_1886	0.41	+1.7
2,122,386	-		PP_1886	0.41	+0.3
2,122,451	+		PP_1886	0.44	+0.9
2,122,546	-		PP_1886	0.47	+2.3
2,122,649	+		PP_1886	0.50	+0.8
2,122,650	-		PP_1886	0.50	-1.2
2,122,650	-		PP_1886	0.50	+0.0
2,122,864	-		PP_1886	0.58	-0.0
2,122,864	-		PP_1886	0.58	+0.7
2,123,087	+		PP_1886	0.65	-0.1
2,123,087	+		PP_1886	0.65	-0.7
2,123,088	-		PP_1886	0.65	+0.3
2,123,088	-		PP_1886	0.65	+0.4
2,123,109	+		PP_1886	0.66	-0.1
2,123,109	+		PP_1886	0.66	+0.2
2,123,110	-		PP_1886	0.66	-0.1
2,123,110	-		PP_1886	0.66	-0.0
2,123,110	-		PP_1886	0.66	-1.4
2,123,110	-		PP_1886	0.66	-0.9
2,123,110	-		PP_1886	0.66	-0.3
2,123,245	-		PP_1886	0.71	+1.1
2,123,345	-		PP_1886	0.74	+0.5
2,123,345	-		PP_1886	0.74	+0.1
2,123,345	-		PP_1886	0.74	+0.6
2,123,396	+		PP_1886	0.76	+0.7
2,123,396	+		PP_1886	0.76	+0.6
2,123,397	-		PP_1886	0.76	-0.2
2,123,443	-		PP_1886	0.78	-1.0
2,123,443	-		PP_1886	0.78	-0.3
2,123,459	+		PP_1886	0.78	+0.9
2,123,474	+		PP_1886	0.79	-0.0
2,123,475	-		PP_1886	0.79	+0.2
2,123,475	-		PP_1886	0.79	+0.5
2,123,475	-		PP_1886	0.79	+0.8
2,123,513	-		PP_1886	0.80	+0.9
2,123,588	+		PP_1886	0.82	-1.1
2,123,606	+		PP_1886	0.83	-0.3
2,123,607	-		PP_1886	0.83	+0.5
2,123,699	+		PP_1886	0.86	+0.3
2,123,699	+		PP_1886	0.86	+0.2
2,123,700	-		PP_1886	0.86	+0.4
2,123,822	+				+0.2
2,123,881	+				-0.4
2,123,894	-				+0.5
2,123,978	+				-0.0
2,123,978	+				-0.1
2,123,979	-				-0.3
2,124,010	+				+0.2
2,124,096	+				+0.4
2,124,096	+				-0.4
2,124,097	-				-0.5
2,124,097	-				-0.5
2,124,189	+		PP_5480	0.18	-1.1
2,124,211	-		PP_5480	0.22	+1.1
2,124,224	+		PP_5480	0.25	-0.5
2,124,244	-		PP_5480	0.29	+0.5
2,124,265	-		PP_5480	0.33	+0.1
2,124,334	-		PP_5480	0.46	-0.3
2,124,339	-		PP_5480	0.47	-0.1
2,124,391	+		PP_5480	0.58	-0.3
2,124,523	-		PP_5480	0.84	+0.9
2,124,535	-		PP_5480	0.86	-0.6
2,124,600	+				-1.6
2,124,681	+				-2.3
2,124,682	-				-1.9
2,124,685	+				-0.8
2,124,685	+				-1.3
2,124,686	-				+0.3
2,124,856	+				+0.7
2,124,856	+				-0.0
2,124,857	-				+0.2
2,124,908	+				+0.5
2,124,969	+				+0.6
2,124,970	-				+1.0
2,124,970	-				-0.6
2,124,970	-				-1.2
2,124,970	-				+0.4