Experiment: JP1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02850 and PS417_02855 overlap by 4 nucleotides PS417_02855 and PS417_02860 are separated by 23 nucleotides PS417_02860 and PS417_02865 are separated by 152 nucleotides
PS417_02850: PS417_02850 - iron ABC transporter substrate-binding protein, at 650,590 to 651,537
_02850
PS417_02855: PS417_02855 - histidinol phosphatase, at 651,534 to 652,316
_02855
PS417_02860: PS417_02860 - TonB-dependent receptor, at 652,340 to 654,448
_02860
PS417_02865: PS417_02865 - peptidase, at 654,601 to 655,983
_02865
Position (kb) 652
653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 651.464 kb on + strand at 651.554 kb on + strand at 651.641 kb on + strand, within PS417_02855 at 651.641 kb on + strand, within PS417_02855 at 651.678 kb on + strand, within PS417_02855 at 651.785 kb on - strand, within PS417_02855 at 651.969 kb on - strand, within PS417_02855 at 652.145 kb on + strand, within PS417_02855 at 652.145 kb on + strand, within PS417_02855 at 652.350 kb on + strand at 652.351 kb on - strand at 652.351 kb on - strand at 652.410 kb on + strand at 652.410 kb on + strand at 652.410 kb on + strand at 652.411 kb on - strand at 652.425 kb on + strand at 652.425 kb on + strand at 652.426 kb on - strand at 652.512 kb on + strand at 652.736 kb on + strand, within PS417_02860 at 652.736 kb on + strand, within PS417_02860 at 652.737 kb on - strand, within PS417_02860 at 652.786 kb on + strand, within PS417_02860 at 652.916 kb on - strand, within PS417_02860 at 653.011 kb on - strand, within PS417_02860 at 653.019 kb on + strand, within PS417_02860 at 653.134 kb on - strand, within PS417_02860 at 653.168 kb on - strand, within PS417_02860 at 653.355 kb on + strand, within PS417_02860 at 653.356 kb on - strand, within PS417_02860 at 653.496 kb on + strand, within PS417_02860 at 653.496 kb on + strand, within PS417_02860 at 653.497 kb on - strand, within PS417_02860 at 653.638 kb on - strand, within PS417_02860 at 653.638 kb on - strand, within PS417_02860 at 653.848 kb on - strand, within PS417_02860 at 653.905 kb on - strand, within PS417_02860 at 654.087 kb on + strand, within PS417_02860 at 654.087 kb on + strand, within PS417_02860 at 654.088 kb on - strand, within PS417_02860 at 654.106 kb on - strand, within PS417_02860 at 654.439 kb on - strand at 654.439 kb on - strand at 654.439 kb on - strand at 654.523 kb on - strand at 654.646 kb on + strand at 654.941 kb on + strand, within PS417_02865 at 654.942 kb on - strand, within PS417_02865 at 654.942 kb on - strand, within PS417_02865 at 655.329 kb on - strand, within PS417_02865
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 0.1 remove 651,464 + +0.6 651,554 + -0.3 651,641 + PS417_02855 0.14 +1.8 651,641 + PS417_02855 0.14 -0.8 651,678 + PS417_02855 0.18 -0.3 651,785 - PS417_02855 0.32 +0.9 651,969 - PS417_02855 0.56 -0.7 652,145 + PS417_02855 0.78 +0.3 652,145 + PS417_02855 0.78 -1.4 652,350 + -1.1 652,351 - -0.7 652,351 - +0.8 652,410 + -1.0 652,410 + -1.1 652,410 + -0.1 652,411 - +1.1 652,425 + +0.0 652,425 + -0.9 652,426 - -0.4 652,512 + +1.4 652,736 + PS417_02860 0.19 -0.1 652,736 + PS417_02860 0.19 +2.2 652,737 - PS417_02860 0.19 +0.2 652,786 + PS417_02860 0.21 -0.3 652,916 - PS417_02860 0.27 +0.4 653,011 - PS417_02860 0.32 +0.3 653,019 + PS417_02860 0.32 +2.7 653,134 - PS417_02860 0.38 +0.7 653,168 - PS417_02860 0.39 +0.7 653,355 + PS417_02860 0.48 -2.2 653,356 - PS417_02860 0.48 -0.7 653,496 + PS417_02860 0.55 -0.1 653,496 + PS417_02860 0.55 +0.2 653,497 - PS417_02860 0.55 +0.6 653,638 - PS417_02860 0.62 -0.3 653,638 - PS417_02860 0.62 +0.8 653,848 - PS417_02860 0.72 +0.8 653,905 - PS417_02860 0.74 -1.2 654,087 + PS417_02860 0.83 -0.9 654,087 + PS417_02860 0.83 -0.6 654,088 - PS417_02860 0.83 +0.5 654,106 - PS417_02860 0.84 +0.1 654,439 - +0.2 654,439 - +0.9 654,439 - +0.4 654,523 - +2.3 654,646 + +0.3 654,941 + PS417_02865 0.25 +0.1 654,942 - PS417_02865 0.25 -1.9 654,942 - PS417_02865 0.25 -2.9 655,329 - PS417_02865 0.53 +0.3
Or see this region's nucleotide sequence