Experiment: JP1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01800 and PS417_01805 are separated by 219 nucleotides PS417_01805 and PS417_01810 are separated by 162 nucleotides
PS417_01800: PS417_01800 - amino acid ABC transporter substrate-binding protein, at 402,032 to 402,832
_01800
PS417_01805: PS417_01805 - amino acid ABC transporter substrate-binding protein, at 403,052 to 403,849
_01805
PS417_01810: PS417_01810 - ABC transporter permease, at 404,012 to 404,971
_01810
Position (kb) 403
404 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 402.063 kb on + strand at 402.063 kb on + strand at 402.161 kb on + strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.614 kb on + strand, within PS417_01800 at 402.728 kb on - strand, within PS417_01800 at 402.773 kb on + strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.839 kb on + strand at 402.848 kb on - strand at 402.929 kb on + strand at 402.930 kb on - strand at 402.930 kb on - strand at 402.930 kb on - strand at 403.025 kb on + strand at 403.025 kb on + strand at 403.026 kb on - strand at 403.026 kb on - strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.028 kb on - strand at 403.178 kb on + strand, within PS417_01805 at 403.179 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.551 kb on - strand at 403.551 kb on - strand, within PS417_01805 at 403.590 kb on + strand, within PS417_01805 at 403.591 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.638 kb on + strand, within PS417_01805 at 403.639 kb on - strand, within PS417_01805 at 403.677 kb on - strand, within PS417_01805 at 403.734 kb on - strand, within PS417_01805 at 403.790 kb on + strand at 404.087 kb on + strand at 404.087 kb on + strand at 404.088 kb on - strand at 404.088 kb on - strand at 404.091 kb on - strand at 404.091 kb on - strand at 404.112 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.509 kb on + strand, within PS417_01810 at 404.510 kb on - strand, within PS417_01810 at 404.517 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.774 kb on - strand, within PS417_01810 at 404.775 kb on + strand, within PS417_01810 at 404.776 kb on - strand, within PS417_01810
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 0.1 remove 402,063 + -1.2 402,063 + -0.2 402,161 + PS417_01800 0.16 -0.2 402,162 - PS417_01800 0.16 +0.0 402,162 - PS417_01800 0.16 +1.1 402,162 - PS417_01800 0.16 +0.8 402,162 - PS417_01800 0.16 -0.5 402,162 - PS417_01800 0.16 +0.9 402,162 - +0.8 402,598 + PS417_01800 0.71 +0.1 402,598 + PS417_01800 0.71 -1.1 402,598 + PS417_01800 0.71 -0.5 402,614 + PS417_01800 0.73 -2.5 402,728 - PS417_01800 0.87 +0.3 402,773 + -0.0 402,774 - -0.5 402,774 - -0.9 402,774 - +0.8 402,774 - -0.6 402,839 + +0.2 402,848 - -0.3 402,929 + +1.8 402,930 - -1.9 402,930 - -1.6 402,930 - +1.3 403,025 + +2.6 403,025 + -2.7 403,026 - +0.3 403,026 - +0.8 403,027 + -0.2 403,027 + -0.6 403,027 + -0.7 403,027 + +0.2 403,028 - +0.7 403,178 + PS417_01805 0.16 +0.1 403,179 - PS417_01805 0.16 +0.9 403,458 - PS417_01805 0.51 +0.7 403,458 - PS417_01805 0.51 -0.3 403,458 - PS417_01805 0.51 -0.1 403,458 - PS417_01805 0.51 +2.4 403,458 - PS417_01805 0.51 -1.0 403,458 - PS417_01805 0.51 +1.8 403,460 - PS417_01805 0.51 +1.2 403,460 - PS417_01805 0.51 -0.1 403,460 - PS417_01805 0.51 +0.3 403,460 - PS417_01805 0.51 +0.9 403,550 + PS417_01805 0.62 +0.1 403,550 + PS417_01805 0.62 +0.3 403,551 - +1.8 403,551 - PS417_01805 0.63 -1.0 403,590 + PS417_01805 0.67 +1.8 403,591 - PS417_01805 0.68 +0.7 403,632 - PS417_01805 0.73 -1.2 403,632 - PS417_01805 0.73 +0.0 403,632 - PS417_01805 0.73 +4.1 403,638 + PS417_01805 0.73 -0.3 403,639 - PS417_01805 0.74 -1.6 403,677 - PS417_01805 0.78 +0.3 403,734 - PS417_01805 0.85 -1.2 403,790 + +1.9 404,087 + -0.1 404,087 + +0.5 404,088 - -1.5 404,088 - -0.9 404,091 - -0.3 404,091 - -1.7 404,112 - PS417_01810 0.10 -0.5 404,142 - PS417_01810 0.14 -1.7 404,142 - PS417_01810 0.14 -1.2 404,509 + PS417_01810 0.52 +1.8 404,510 - PS417_01810 0.52 -1.2 404,517 + PS417_01810 0.53 +0.1 404,618 + PS417_01810 0.63 -2.6 404,618 + PS417_01810 0.63 -1.6 404,618 + PS417_01810 0.63 +1.1 404,618 + PS417_01810 0.63 +0.8 404,619 - PS417_01810 0.63 -0.8 404,619 - PS417_01810 0.63 +0.7 404,773 + PS417_01810 0.79 +0.2 404,773 + PS417_01810 0.79 -0.2 404,774 - PS417_01810 0.79 -1.6 404,775 + PS417_01810 0.79 -0.7 404,776 - PS417_01810 0.80 +0.5
Or see this region's nucleotide sequence