Strain Fitness in Pseudomonas simiae WCS417 around PS417_00690

Experiment: JP1 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00680 and PS417_00685 are separated by 130 nucleotidesPS417_00685 and PS417_00690 overlap by 4 nucleotidesPS417_00690 and PS417_00695 are separated by 168 nucleotides PS417_00680: PS417_00680 - TonB-dependent receptor, at 139,370 to 141,823 _00680 PS417_00685: PS417_00685 - hypothetical protein, at 141,954 to 142,658 _00685 PS417_00690: PS417_00690 - hypothetical protein, at 142,655 to 144,823 _00690 PS417_00695: PS417_00695 - membrane protein, at 144,992 to 146,596 _00695 Position (kb) 142 143 144 145Strain fitness (log2 ratio) -2 -1 0 1 2 3at 141.740 kb on + strandat 141.741 kb on - strandat 141.741 kb on - strandat 141.741 kb on - strandat 141.773 kb on + strandat 141.773 kb on + strandat 141.774 kb on - strandat 141.776 kb on + strandat 141.813 kb on - strandat 141.821 kb on + strandat 141.839 kb on - strandat 141.980 kb on - strandat 142.006 kb on - strandat 142.006 kb on - strandat 142.009 kb on + strandat 142.087 kb on + strand, within PS417_00685at 142.123 kb on + strand, within PS417_00685at 142.123 kb on + strand, within PS417_00685at 142.123 kb on + strand, within PS417_00685at 142.124 kb on - strand, within PS417_00685at 142.373 kb on - strand, within PS417_00685at 142.522 kb on + strandat 142.522 kb on + strand, within PS417_00685at 142.589 kb on - strandat 142.662 kb on + strandat 142.665 kb on + strandat 142.666 kb on - strandat 142.666 kb on - strandat 142.770 kb on + strandat 142.770 kb on + strandat 142.770 kb on + strandat 143.124 kb on + strand, within PS417_00690at 143.124 kb on + strand, within PS417_00690at 143.125 kb on - strand, within PS417_00690at 143.325 kb on + strand, within PS417_00690at 143.325 kb on + strand, within PS417_00690at 143.325 kb on + strand, within PS417_00690at 143.326 kb on - strand, within PS417_00690at 143.394 kb on + strand, within PS417_00690at 143.395 kb on - strand, within PS417_00690at 143.544 kb on + strand, within PS417_00690at 143.545 kb on - strand, within PS417_00690at 143.545 kb on - strand, within PS417_00690at 143.610 kb on + strandat 143.611 kb on - strand, within PS417_00690at 143.640 kb on + strand, within PS417_00690at 143.641 kb on - strand, within PS417_00690at 143.641 kb on - strand, within PS417_00690at 143.868 kb on + strand, within PS417_00690at 143.890 kb on + strand, within PS417_00690at 143.891 kb on - strand, within PS417_00690at 144.079 kb on + strand, within PS417_00690at 144.079 kb on + strand, within PS417_00690at 144.079 kb on + strand, within PS417_00690at 144.080 kb on - strand, within PS417_00690at 144.080 kb on - strand, within PS417_00690at 144.093 kb on + strand, within PS417_00690at 144.093 kb on + strand, within PS417_00690at 144.093 kb on + strand, within PS417_00690at 144.093 kb on + strand, within PS417_00690at 144.094 kb on - strand, within PS417_00690at 144.094 kb on - strand, within PS417_00690at 144.201 kb on + strand, within PS417_00690at 144.201 kb on + strand, within PS417_00690at 144.202 kb on - strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.461 kb on + strand, within PS417_00690at 144.861 kb on + strandat 144.861 kb on + strandat 144.862 kb on - strandat 144.862 kb on - strandat 144.864 kb on + strandat 144.864 kb on + strandat 144.864 kb on + strandat 144.882 kb on - strandat 145.009 kb on - strandat 145.045 kb on + strandat 145.131 kb on - strandat 145.131 kb on - strandat 145.191 kb on - strand, within PS417_00695at 145.191 kb on - strand, within PS417_00695at 145.191 kb on - strand, within PS417_00695at 145.451 kb on + strand, within PS417_00695at 145.451 kb on + strand, within PS417_00695at 145.451 kb on + strand, within PS417_00695at 145.452 kb on - strand, within PS417_00695at 145.452 kb on - strand, within PS417_00695at 145.529 kb on + strand, within PS417_00695at 145.541 kb on + strand, within PS417_00695at 145.568 kb on + strand, within PS417_00695at 145.568 kb on + strand, within PS417_00695at 145.569 kb on - strand, within PS417_00695at 145.577 kb on + strand, within PS417_00695at 145.706 kb on + strand, within PS417_00695at 145.706 kb on + strand, within PS417_00695at 145.706 kb on + strand, within PS417_00695at 145.706 kb on + strand, within PS417_00695at 145.707 kb on - strand, within PS417_00695

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 0.1
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141,740 + -0.3
141,741 - +0.0
141,741 - -1.7
141,741 - -2.3
141,773 + -0.6
141,773 + +0.3
141,774 - +0.9
141,776 + +1.5
141,813 - +0.8
141,821 + -0.2
141,839 - -0.7
141,980 - +0.1
142,006 - +2.2
142,006 - -0.4
142,009 + -0.3
142,087 + PS417_00685 0.19 -1.8
142,123 + PS417_00685 0.24 -0.4
142,123 + PS417_00685 0.24 +1.3
142,123 + PS417_00685 0.24 -0.9
142,124 - PS417_00685 0.24 +2.9
142,373 - PS417_00685 0.59 -0.1
142,522 + +0.9
142,522 + PS417_00685 0.81 +0.7
142,589 - -0.1
142,662 + +0.2
142,665 + -0.7
142,666 - +0.6
142,666 - -1.2
142,770 + +0.0
142,770 + -1.4
142,770 + +1.8
143,124 + PS417_00690 0.22 +0.7
143,124 + PS417_00690 0.22 +0.8
143,125 - PS417_00690 0.22 -0.7
143,325 + PS417_00690 0.31 -0.3
143,325 + PS417_00690 0.31 -0.8
143,325 + PS417_00690 0.31 +1.1
143,326 - PS417_00690 0.31 +0.9
143,394 + PS417_00690 0.34 -1.3
143,395 - PS417_00690 0.34 +1.1
143,544 + PS417_00690 0.41 -0.4
143,545 - PS417_00690 0.41 -1.4
143,545 - PS417_00690 0.41 +0.0
143,610 + -0.4
143,611 - PS417_00690 0.44 +1.7
143,640 + PS417_00690 0.45 +0.2
143,641 - PS417_00690 0.45 +0.9
143,641 - PS417_00690 0.45 +1.1
143,868 + PS417_00690 0.56 +1.4
143,890 + PS417_00690 0.57 -1.3
143,891 - PS417_00690 0.57 +1.8
144,079 + PS417_00690 0.66 -0.3
144,079 + PS417_00690 0.66 -0.3
144,079 + PS417_00690 0.66 -0.0
144,080 - PS417_00690 0.66 -1.4
144,080 - PS417_00690 0.66 +0.6
144,093 + PS417_00690 0.66 +1.5
144,093 + PS417_00690 0.66 -0.5
144,093 + PS417_00690 0.66 -1.9
144,093 + PS417_00690 0.66 +1.9
144,094 - PS417_00690 0.66 -0.4
144,094 - PS417_00690 0.66 +1.2
144,201 + PS417_00690 0.71 +1.1
144,201 + PS417_00690 0.71 -1.2
144,202 - PS417_00690 0.71 +0.9
144,205 + PS417_00690 0.71 +0.3
144,205 + PS417_00690 0.71 +0.1
144,205 + PS417_00690 0.71 +0.5
144,205 + PS417_00690 0.71 -0.2
144,205 + PS417_00690 0.71 +0.3
144,205 + PS417_00690 0.71 +1.1
144,205 + PS417_00690 0.71 -0.3
144,461 + PS417_00690 0.83 +1.3
144,861 + -1.8
144,861 + -1.0
144,862 - -0.2
144,862 - -1.0
144,864 + -0.4
144,864 + +0.6
144,864 + -1.1
144,882 - -2.4
145,009 - -0.7
145,045 + +0.1
145,131 - -0.7
145,131 - -0.9
145,191 - PS417_00695 0.12 +0.1
145,191 - PS417_00695 0.12 -1.0
145,191 - PS417_00695 0.12 +0.9
145,451 + PS417_00695 0.29 -2.5
145,451 + PS417_00695 0.29 -1.8
145,451 + PS417_00695 0.29 -0.8
145,452 - PS417_00695 0.29 +0.1
145,452 - PS417_00695 0.29 +0.3
145,529 + PS417_00695 0.33 -1.0
145,541 + PS417_00695 0.34 +0.4
145,568 + PS417_00695 0.36 -2.2
145,568 + PS417_00695 0.36 +1.4
145,569 - PS417_00695 0.36 -1.3
145,577 + PS417_00695 0.36 +0.4
145,706 + PS417_00695 0.44 -0.0
145,706 + PS417_00695 0.44 -0.9
145,706 + PS417_00695 0.44 -0.6
145,706 + PS417_00695 0.44 -0.4
145,707 - PS417_00695 0.45 +0.8

Or see this region's nucleotide sequence