Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4845 and PP_4846 are separated by 31 nucleotides PP_4846 and PP_4847 are separated by 136 nucleotides PP_4847 and PP_4848 are separated by 2 nucleotides
PP_4845: PP_4845 - putative Urea ABC transporter, ATP-binding protein, at 5,513,376 to 5,514,074
_4845
PP_4846: PP_4846 - L-amino acid N-acyltransferase, at 5,514,106 to 5,514,621
_4846
PP_4847: PP_4847 - chaperone modulatory of CbpA co-chaperone protein, at 5,514,758 to 5,515,063
_4847
PP_4848: PP_4848 - Curved DNA-binding protein, at 5,515,066 to 5,516,025
_4848
Position (kb) 5514
5515
5516 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5513.955 kb on + strand, within PP_4845 at 5513.956 kb on - strand, within PP_4845 at 5514.052 kb on + strand at 5514.052 kb on + strand at 5514.052 kb on + strand at 5514.053 kb on - strand at 5514.053 kb on - strand at 5514.064 kb on + strand at 5514.072 kb on + strand at 5514.073 kb on - strand at 5514.152 kb on + strand at 5514.163 kb on + strand, within PP_4846 at 5514.164 kb on - strand, within PP_4846 at 5514.164 kb on - strand, within PP_4846 at 5514.164 kb on - strand, within PP_4846 at 5514.164 kb on - strand, within PP_4846 at 5514.304 kb on + strand, within PP_4846 at 5514.367 kb on + strand, within PP_4846 at 5514.367 kb on + strand, within PP_4846 at 5514.368 kb on - strand, within PP_4846 at 5514.552 kb on + strand, within PP_4846 at 5514.759 kb on + strand at 5514.759 kb on + strand at 5514.760 kb on - strand at 5515.027 kb on + strand, within PP_4847 at 5515.028 kb on - strand, within PP_4847 at 5515.028 kb on - strand, within PP_4847 at 5515.071 kb on + strand at 5515.071 kb on + strand at 5515.071 kb on + strand at 5515.072 kb on - strand at 5515.072 kb on - strand at 5515.179 kb on - strand, within PP_4848 at 5515.814 kb on + strand, within PP_4848 at 5515.815 kb on - strand, within PP_4848 at 5515.868 kb on + strand, within PP_4848 at 5515.869 kb on - strand, within PP_4848 at 5515.931 kb on + strand at 5515.931 kb on + strand at 5515.932 kb on - strand at 5515.932 kb on - strand at 5515.999 kb on + strand at 5516.006 kb on + strand at 5516.006 kb on + strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.007 kb on - strand at 5516.009 kb on + strand at 5516.009 kb on + strand at 5516.010 kb on - strand at 5516.028 kb on - strand at 5516.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 5,513,955 + PP_4845 0.83 -0.2 5,513,956 - PP_4845 0.83 +0.7 5,514,052 + -1.2 5,514,052 + +0.2 5,514,052 + -0.2 5,514,053 - -0.3 5,514,053 - +1.5 5,514,064 + -0.5 5,514,072 + +1.1 5,514,073 - +0.1 5,514,152 + +0.6 5,514,163 + PP_4846 0.11 +1.3 5,514,164 - PP_4846 0.11 -1.2 5,514,164 - PP_4846 0.11 +0.0 5,514,164 - PP_4846 0.11 -0.2 5,514,164 - PP_4846 0.11 -0.0 5,514,304 + PP_4846 0.38 +1.0 5,514,367 + PP_4846 0.51 -1.6 5,514,367 + PP_4846 0.51 -1.2 5,514,368 - PP_4846 0.51 -0.5 5,514,552 + PP_4846 0.86 -0.3 5,514,759 + +1.2 5,514,759 + +0.1 5,514,760 - -2.6 5,515,027 + PP_4847 0.88 +0.4 5,515,028 - PP_4847 0.88 +0.4 5,515,028 - PP_4847 0.88 +0.5 5,515,071 + +0.2 5,515,071 + -0.6 5,515,071 + +0.2 5,515,072 - -0.8 5,515,072 - -0.5 5,515,179 - PP_4848 0.12 +0.3 5,515,814 + PP_4848 0.78 +0.8 5,515,815 - PP_4848 0.78 +1.2 5,515,868 + PP_4848 0.84 -3.7 5,515,869 - PP_4848 0.84 +0.6 5,515,931 + +0.5 5,515,931 + -0.5 5,515,932 - +0.3 5,515,932 - -1.2 5,515,999 + +0.4 5,516,006 + +0.2 5,516,006 + +0.1 5,516,007 - -0.1 5,516,007 - -0.4 5,516,007 - -0.3 5,516,007 - +0.7 5,516,009 + -0.3 5,516,009 + -1.0 5,516,010 - -0.1 5,516,028 - +0.7 5,516,028 - -0.7
Or see this region's nucleotide sequence