Strain Fitness in Pseudomonas putida KT2440 around PP_4429

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
5,023,292	-		PP_4428	0.25	+1.3
5,023,342	+		PP_4428	0.31	-0.4
5,023,343	-		PP_4428	0.31	+0.5
5,023,392	+		PP_4428	0.36	+0.3
5,023,442	+		PP_4428	0.42	-0.4
5,023,565	+		PP_4428	0.57	-1.3
5,023,613	+		PP_4428	0.62	+0.0
5,023,613	+		PP_4428	0.62	+1.4
5,023,613	+		PP_4428	0.62	+0.6
5,023,613	+		PP_4428	0.62	-0.3
5,023,613	+		PP_4428	0.62	-1.2
5,023,613	+		PP_4428	0.62	-1.4
5,023,613	+		PP_4428	0.62	+0.9
5,023,613	+		PP_4428	0.62	-0.2
5,023,613	+		PP_4428	0.62	+1.9
5,023,613	+		PP_4428	0.62	+0.2
5,023,614	-		PP_4428	0.62	+0.8
5,023,614	-		PP_4428	0.62	-0.3
5,023,614	-		PP_4428	0.62	+0.0
5,023,614	-		PP_4428	0.62	+1.7
5,023,614	-		PP_4428	0.62	+0.4
5,023,614	-		PP_4428	0.62	-0.4
5,023,684	+		PP_4428	0.71	-1.5
5,023,684	+		PP_4428	0.71	+0.9
5,023,685	-		PP_4428	0.71	+0.8
5,023,685	-		PP_4428	0.71	-0.9
5,023,685	-		PP_4428	0.71	-0.2
5,023,775	+		PP_4428	0.81	+0.3
5,023,775	+		PP_4428	0.81	+0.0
5,023,845	+		PP_4428	0.89	+0.5
5,023,845	+		PP_4428	0.89	-0.8
5,023,845	+		PP_4428	0.89	-0.2
5,023,845	+		PP_4428	0.89	+0.1
5,023,845	+		PP_4428	0.89	-0.1
5,023,845	+		PP_4428	0.89	-1.1
5,023,846	-		PP_4428	0.89	-1.5
5,023,846	-		PP_4428	0.89	+1.0
5,023,846	-		PP_4428	0.89	-0.1
5,023,950	+				-1.4
5,023,950	+				+0.4
5,023,956	-				+4.4
5,023,956	-				-2.8
5,023,989	+				-0.1
5,023,989	+				-0.2
5,023,990	-				+0.1
5,023,990	-				+0.5
5,024,034	+				-0.2
5,024,034	+				+0.5
5,024,080	+				-0.1
5,024,080	+				+1.5
5,024,081	-				+0.9
5,024,081	-				+0.1
5,024,111	+				-0.2
5,024,112	-				-1.1
5,024,136	+				-0.1
5,024,136	+				+1.1
5,024,136	+				+0.7
5,024,137	-				+0.9
5,024,137	-				+1.2
5,024,150	+				-0.0
5,024,150	+				+0.3
5,024,150	+				-0.7
5,024,151	-				-0.5
5,024,162	+				+0.1
5,024,163	-				-0.5
5,024,174	+				-0.0
5,024,174	+				-0.7
5,024,174	+				+0.5
5,024,174	+				+0.3
5,024,174	+				+0.7
5,024,175	-				-0.2
5,024,233	+				-0.8
5,024,234	-				-2.0
5,024,277	+				-0.9
5,024,277	+				+0.9
5,024,277	+				-0.2
5,024,277	+				-0.4
5,024,277	+				-0.4
5,024,277	+				+2.5
5,024,277	+				+0.3
5,024,278	-				-0.9
5,024,278	-				-0.1
5,024,362	+		PP_4429	0.13	+0.5
5,024,363	-		PP_4429	0.13	-0.3
5,024,387	+		PP_4429	0.15	-0.8
5,024,387	+		PP_4429	0.15	+0.6
5,024,388	-		PP_4429	0.15	+1.8
5,024,388	-		PP_4429	0.15	-0.0
5,024,388	-		PP_4429	0.15	+0.4
5,024,390	+		PP_4429	0.15	+0.7
5,024,390	+		PP_4429	0.15	-0.1
5,024,391	-		PP_4429	0.15	+0.7
5,024,391	-				+2.1
5,024,391	-		PP_4429	0.15	+0.7
5,024,444	+		PP_4429	0.19	+0.8
5,024,444	+		PP_4429	0.19	+0.6
5,024,444	+		PP_4429	0.19	-0.5
5,024,444	+		PP_4429	0.19	-0.2
5,024,445	-		PP_4429	0.19	-0.7
5,024,445	-		PP_4429	0.19	+0.6
5,024,452	+		PP_4429	0.19	-0.9
5,024,452	+		PP_4429	0.19	+0.3
5,024,452	+		PP_4429	0.19	+0.5
5,024,452	+		PP_4429	0.19	+1.8
5,024,452	+		PP_4429	0.19	+1.1
5,024,453	-		PP_4429	0.20	+0.0
5,024,453	-		PP_4429	0.20	+0.7
5,024,453	-		PP_4429	0.20	-0.1
5,024,490	-		PP_4429	0.22	+1.0
5,024,490	-		PP_4429	0.22	-0.1
5,024,530	+		PP_4429	0.25	+0.2
5,024,530	+		PP_4429	0.25	+0.2
5,024,531	-		PP_4429	0.25	+1.2
5,024,531	-		PP_4429	0.25	+0.6
5,024,531	-		PP_4429	0.25	+1.1
5,024,559	+		PP_4429	0.27	-0.9
5,024,559	+		PP_4429	0.27	+0.5
5,024,560	-		PP_4429	0.27	+0.0
5,024,560	-		PP_4429	0.27	+0.7
5,024,601	-				-0.2
5,024,712	-		PP_4429	0.38	-0.9
5,024,825	+		PP_4429	0.46	+2.4
5,024,900	+		PP_4429	0.51	-0.9
5,024,900	+		PP_4429	0.51	+1.2
5,024,901	-		PP_4429	0.52	-0.8
5,024,916	+		PP_4429	0.53	+0.1
5,024,916	+		PP_4429	0.53	-0.3
5,024,916	+		PP_4429	0.53	-0.3
5,024,917	-		PP_4429	0.53	-0.2
5,024,963	+		PP_4429	0.56	+2.0
5,024,963	+		PP_4429	0.56	-0.4
5,024,963	+		PP_4429	0.56	-0.1
5,024,963	+		PP_4429	0.56	-0.4
5,024,963	+		PP_4429	0.56	-0.4
5,024,963	+		PP_4429	0.56	-1.0
5,024,964	-		PP_4429	0.56	+0.6
5,024,964	-		PP_4429	0.56	+0.9
5,024,964	-		PP_4429	0.56	+0.5
5,024,964	-		PP_4429	0.56	-1.2
5,024,964	-		PP_4429	0.56	+0.2
5,024,964	-		PP_4429	0.56	-0.6
5,024,997	+		PP_4429	0.58	+0.4
5,024,997	+		PP_4429	0.58	+0.5
5,024,998	-		PP_4429	0.58	+1.6
5,024,998	-		PP_4429	0.58	+0.1
5,024,998	-		PP_4429	0.58	-0.1
5,024,998	-		PP_4429	0.58	+0.2
5,025,013	+		PP_4429	0.60	+0.3
5,025,013	+		PP_4429	0.60	+0.1
5,025,014	-		PP_4429	0.60	-1.3
5,025,014	-		PP_4429	0.60	-0.3
5,025,034	+		PP_4429	0.61	+0.5
5,025,035	-		PP_4429	0.61	+0.1
5,025,035	-		PP_4429	0.61	+0.3
5,025,058	+		PP_4429	0.63	+0.2
5,025,058	+		PP_4429	0.63	-1.3
5,025,058	+		PP_4429	0.63	+0.9
5,025,058	+		PP_4429	0.63	-0.4
5,025,059	-		PP_4429	0.63	+0.2
5,025,079	+		PP_4429	0.64	+1.4
5,025,137	+		PP_4429	0.68	-0.3
5,025,137	+		PP_4429	0.68	+1.7
5,025,138	-		PP_4429	0.68	+1.7
5,025,141	+		PP_4429	0.69	+0.2
5,025,142	-		PP_4429	0.69	+0.3
5,025,142	-		PP_4429	0.69	+0.2
5,025,142	-		PP_4429	0.69	+0.7
5,025,142	-		PP_4429	0.69	+0.0
5,025,142	-		PP_4429	0.69	+0.3
5,025,279	-		PP_4429	0.79	-0.0
5,025,300	-		PP_4429	0.80	+0.0
5,025,300	-		PP_4429	0.80	-0.7
5,025,319	+		PP_4429	0.81	+0.2
5,025,325	+		PP_4429	0.82	-0.9
5,025,325	+		PP_4429	0.82	-0.2
5,025,325	+		PP_4429	0.82	-0.0
5,025,326	-		PP_4429	0.82	-1.1
5,025,326	-		PP_4429	0.82	-0.1
5,025,417	+		PP_4429	0.88	+0.3
5,025,417	+				-0.4
5,025,417	+		PP_4429	0.88	+1.2
5,025,417	+		PP_4429	0.88	+1.6
5,025,417	+		PP_4429	0.88	+0.1
5,025,418	-		PP_4429	0.88	+1.0
5,025,418	-		PP_4429	0.88	-0.5
5,025,418	-		PP_4429	0.88	-0.5
5,025,418	-		PP_4429	0.88	+1.2
5,025,418	-		PP_4429	0.88	+0.7
5,025,426	+		PP_4429	0.89	-1.5
5,025,515	+				-0.6
5,025,516	-				+0.3
5,025,516	-				+0.1
5,025,516	-				-0.4
5,025,556	+				+0.3
5,025,557	-				+0.3
5,025,620	+				-0.4
5,025,620	+				-0.3
5,025,621	-				-0.8
5,025,624	-				-1.7
5,025,624	-				-0.7
5,025,651	+				+0.1
5,025,652	-				-1.1
5,025,652	-				-0.6
5,025,683	+				+0.1
5,025,683	+				+0.2
5,025,683	+				+1.6
5,025,683	+				+0.4
5,025,734	+				-3.0
5,025,735	-				+0.3
5,025,804	+		PP_4430	0.12	+0.1
5,025,805	-		PP_4430	0.12	+0.5
5,025,805	-		PP_4430	0.12	+1.1
5,025,805	-		PP_4430	0.12	-0.9
5,025,805	-		PP_4430	0.12	+0.8
5,025,836	+		PP_4430	0.15	-0.4
5,025,837	-		PP_4430	0.15	-0.7
5,025,837	-		PP_4430	0.15	+0.6
5,025,837	-		PP_4430	0.15	+0.6
5,025,878	+		PP_4430	0.19	-0.1
5,025,878	+		PP_4430	0.19	-0.5
5,025,878	+		PP_4430	0.19	-0.4
5,025,878	+		PP_4430	0.19	-0.5
5,025,879	-		PP_4430	0.19	-0.6
5,025,879	-		PP_4430	0.19	+0.1
5,025,904	+		PP_4430	0.22	+2.1
5,025,905	-		PP_4430	0.22	-0.8
5,025,905	-		PP_4430	0.22	+1.0
5,025,907	+		PP_4430	0.22	+0.0
5,025,908	-		PP_4430	0.22	-0.8
5,025,945	+		PP_4430	0.26	-0.3
5,025,946	-		PP_4430	0.26	+0.9
5,026,055	+		PP_4430	0.37	+0.3
5,026,055	+		PP_4430	0.37	-0.7
5,026,056	-		PP_4430	0.37	-1.3
5,026,056	-		PP_4430	0.37	+0.9
5,026,112	+		PP_4430	0.43	+0.7
5,026,112	+		PP_4430	0.43	-0.7
5,026,112	+		PP_4430	0.43	+0.0
5,026,112	+		PP_4430	0.43	-0.0
5,026,113	-		PP_4430	0.43	+1.3
5,026,113	-		PP_4430	0.43	+0.7
5,026,113	-		PP_4430	0.43	-0.1
5,026,113	-		PP_4430	0.43	+0.7
5,026,113	-		PP_4430	0.43	-0.4
5,026,144	+		PP_4430	0.46	+1.2
5,026,144	+		PP_4430	0.46	+0.3
5,026,144	+		PP_4430	0.46	+0.3
5,026,145	-		PP_4430	0.46	+0.3
5,026,145	-		PP_4430	0.46	+1.0
5,026,207	+		PP_4430	0.52	-0.1
5,026,207	+		PP_4430	0.52	-0.8
5,026,207	+		PP_4430	0.52	+0.2
5,026,207	+		PP_4430	0.52	+0.5
5,026,208	-				-0.1
5,026,208	-		PP_4430	0.52	-2.2
5,026,214	-		PP_4430	0.53	+0.2
5,026,214	-		PP_4430	0.53	-1.5
5,026,267	+		PP_4430	0.58	-1.0
5,026,268	-		PP_4430	0.59	+0.1
5,026,268	-		PP_4430	0.59	+0.7
5,026,413	+		PP_4430	0.73	-0.7
5,026,414	-		PP_4430	0.73	+0.5
5,026,414	-		PP_4430	0.73	+0.4
5,026,414	-		PP_4430	0.73	-0.0
5,026,498	-		PP_4430	0.82	+0.2
5,026,498	-		PP_4430	0.82	-0.1
5,026,501	+		PP_4430	0.82	-0.1
5,026,501	+		PP_4430	0.82	+0.0
5,026,501	+		PP_4430	0.82	-0.2
5,026,501	+		PP_4430	0.82	+1.3
5,026,501	+		PP_4430	0.82	-0.6
5,026,502	-		PP_4430	0.82	+1.6
5,026,502	-		PP_4430	0.82	+0.8
5,026,502	-		PP_4430	0.82	-0.8
5,026,502	-		PP_4430	0.82	+0.5
5,026,502	-		PP_4430	0.82	-1.5
5,026,502	-		PP_4430	0.82	+0.2
5,026,502	-		PP_4430	0.82	-0.7
5,026,537	+		PP_4430	0.86	-0.2
5,026,538	-		PP_4430	0.86	-0.8
5,026,538	-		PP_4430	0.86	+0.1
5,026,538	-		PP_4430	0.86	+2.1
5,026,538	-		PP_4430	0.86	+0.4
5,026,541	+		PP_4430	0.86	+0.2
5,026,541	+		PP_4430	0.86	+1.0
5,026,542	-		PP_4430	0.86	+1.3
5,026,557	-		PP_4430	0.88	-0.5