Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3873 and PP_3874 overlap by 8 nucleotides PP_3874 and PP_3875 are separated by 2 nucleotides PP_3875 and PP_3876 are separated by 2 nucleotides PP_3876 and PP_3877 overlap by 26 nucleotides
PP_3873: PP_3873 - conserved protein of unknown function, at 4,395,803 to 4,396,318
_3873
PP_3874: PP_3874 - conserved protein of unknown function, at 4,396,311 to 4,396,685
_3874
PP_3875: PP_3875 - conserved protein of unknown function, at 4,396,688 to 4,397,239
_3875
PP_3876: PP_3876 - conserved protein of unknown function, at 4,397,242 to 4,397,568
_3876
PP_3877: PP_3877 - conserved protein of unknown function, at 4,397,543 to 4,398,856
_3877
Position (kb) 4397
4398 Strain fitness (log2 ratio) -1
0
1
2 at 4396.312 kb on + strand at 4396.313 kb on - strand at 4396.318 kb on + strand at 4396.318 kb on + strand at 4396.520 kb on - strand, within PP_3874 at 4396.520 kb on - strand, within PP_3874 at 4396.628 kb on + strand, within PP_3874 at 4396.629 kb on - strand, within PP_3874 at 4396.667 kb on + strand at 4396.667 kb on + strand at 4396.667 kb on + strand at 4396.668 kb on - strand at 4396.668 kb on - strand at 4396.671 kb on + strand at 4396.671 kb on + strand at 4396.671 kb on + strand at 4396.672 kb on - strand at 4396.672 kb on - strand at 4396.679 kb on + strand at 4396.863 kb on + strand, within PP_3875 at 4396.874 kb on + strand, within PP_3875 at 4396.875 kb on - strand, within PP_3875 at 4396.911 kb on + strand, within PP_3875 at 4396.921 kb on + strand, within PP_3875 at 4396.921 kb on + strand, within PP_3875 at 4396.922 kb on - strand, within PP_3875 at 4397.221 kb on - strand at 4397.221 kb on - strand at 4397.384 kb on + strand, within PP_3876 at 4397.472 kb on + strand, within PP_3876 at 4397.473 kb on - strand, within PP_3876 at 4397.545 kb on - strand at 4397.554 kb on + strand at 4397.809 kb on + strand, within PP_3877 at 4397.834 kb on + strand, within PP_3877 at 4397.835 kb on - strand, within PP_3877 at 4397.835 kb on - strand, within PP_3877 at 4397.860 kb on - strand, within PP_3877 at 4398.155 kb on + strand, within PP_3877 at 4398.155 kb on + strand, within PP_3877 at 4398.155 kb on + strand, within PP_3877 at 4398.155 kb on + strand, within PP_3877 at 4398.156 kb on - strand, within PP_3877 at 4398.156 kb on - strand, within PP_3877 at 4398.289 kb on - strand, within PP_3877 at 4398.289 kb on - strand, within PP_3877 at 4398.486 kb on + strand, within PP_3877 at 4398.487 kb on - strand, within PP_3877
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 4,396,312 + +0.5 4,396,313 - -1.7 4,396,318 + +0.3 4,396,318 + -0.7 4,396,520 - PP_3874 0.56 -0.0 4,396,520 - PP_3874 0.56 -0.2 4,396,628 + PP_3874 0.85 +0.4 4,396,629 - PP_3874 0.85 -0.6 4,396,667 + +1.5 4,396,667 + +1.2 4,396,667 + -1.3 4,396,668 - +0.5 4,396,668 - -0.6 4,396,671 + -1.0 4,396,671 + +0.7 4,396,671 + +0.0 4,396,672 - -0.9 4,396,672 - +0.9 4,396,679 + +0.1 4,396,863 + PP_3875 0.32 +0.5 4,396,874 + PP_3875 0.34 +0.3 4,396,875 - PP_3875 0.34 -0.7 4,396,911 + PP_3875 0.40 -0.8 4,396,921 + PP_3875 0.42 +1.0 4,396,921 + PP_3875 0.42 +0.8 4,396,922 - PP_3875 0.42 -0.1 4,397,221 - -0.2 4,397,221 - +0.6 4,397,384 + PP_3876 0.43 -1.2 4,397,472 + PP_3876 0.70 +0.8 4,397,473 - PP_3876 0.71 +1.4 4,397,545 - -1.1 4,397,554 + +0.5 4,397,809 + PP_3877 0.20 -0.2 4,397,834 + PP_3877 0.22 +1.5 4,397,835 - PP_3877 0.22 -0.4 4,397,835 - PP_3877 0.22 +0.2 4,397,860 - PP_3877 0.24 -0.3 4,398,155 + PP_3877 0.47 -0.1 4,398,155 + PP_3877 0.47 +0.5 4,398,155 + PP_3877 0.47 +0.4 4,398,155 + PP_3877 0.47 +0.2 4,398,156 - PP_3877 0.47 -0.4 4,398,156 - PP_3877 0.47 +0.6 4,398,289 - PP_3877 0.57 -1.1 4,398,289 - PP_3877 0.57 +0.4 4,398,486 + PP_3877 0.72 +0.0 4,398,487 - PP_3877 0.72 +1.8
Or see this region's nucleotide sequence