Strain Fitness in Pseudomonas simiae WCS417 around PS417_05065

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05055 and PS417_05060 are separated by 274 nucleotidesPS417_05060 and PS417_05065 overlap by 4 nucleotidesPS417_05065 and PS417_05070 are separated by 277 nucleotides PS417_05055: PS417_05055 - hypothetical protein, at 1,124,476 to 1,124,736 _05055 PS417_05060: PS417_05060 - PsiE family protein, at 1,125,011 to 1,125,499 _05060 PS417_05065: PS417_05065 - hypothetical protein, at 1,125,496 to 1,125,810 _05065 PS417_05070: PS417_05070 - serine/threonine protein kinase, at 1,126,088 to 1,127,374 _05070 Position (kb) 1125 1126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1124.568 kb on + strand, within PS417_05055at 1124.568 kb on + strand, within PS417_05055at 1124.691 kb on + strand, within PS417_05055at 1124.691 kb on + strand, within PS417_05055at 1124.692 kb on - strand, within PS417_05055at 1124.763 kb on + strandat 1124.763 kb on + strandat 1124.764 kb on - strandat 1124.814 kb on - strandat 1124.870 kb on + strandat 1124.870 kb on + strandat 1124.920 kb on + strandat 1124.922 kb on + strandat 1124.923 kb on - strandat 1124.923 kb on - strandat 1124.996 kb on + strandat 1125.049 kb on - strandat 1125.049 kb on - strandat 1125.212 kb on + strand, within PS417_05060at 1125.212 kb on + strand, within PS417_05060at 1125.212 kb on + strand, within PS417_05060at 1125.242 kb on + strand, within PS417_05060at 1125.242 kb on + strand, within PS417_05060at 1125.242 kb on + strand, within PS417_05060at 1125.260 kb on - strand, within PS417_05060at 1125.281 kb on + strand, within PS417_05060at 1125.281 kb on + strand, within PS417_05060at 1125.282 kb on - strand, within PS417_05060at 1125.282 kb on - strand, within PS417_05060at 1125.359 kb on + strand, within PS417_05060at 1125.359 kb on + strand, within PS417_05060at 1125.360 kb on - strand, within PS417_05060at 1125.541 kb on + strand, within PS417_05065at 1125.541 kb on + strand, within PS417_05065at 1125.824 kb on + strandat 1125.827 kb on + strandat 1125.827 kb on + strandat 1125.827 kb on + strandat 1125.906 kb on + strandat 1125.907 kb on - strandat 1125.932 kb on + strandat 1125.934 kb on + strandat 1125.935 kb on - strandat 1126.006 kb on - strandat 1126.013 kb on - strandat 1126.013 kb on - strandat 1126.013 kb on - strandat 1126.019 kb on + strandat 1126.019 kb on + strandat 1126.061 kb on + strandat 1126.061 kb on + strandat 1126.148 kb on + strandat 1126.148 kb on + strandat 1126.148 kb on + strandat 1126.149 kb on - strandat 1126.149 kb on - strandat 1126.149 kb on - strandat 1126.149 kb on - strandat 1126.203 kb on + strandat 1126.203 kb on + strandat 1126.203 kb on + strandat 1126.412 kb on + strand, within PS417_05070at 1126.413 kb on - strand, within PS417_05070at 1126.416 kb on + strand, within PS417_05070at 1126.416 kb on + strand, within PS417_05070at 1126.416 kb on + strand, within PS417_05070at 1126.416 kb on + strand, within PS417_05070at 1126.416 kb on + strand, within PS417_05070at 1126.417 kb on - strand, within PS417_05070at 1126.435 kb on + strandat 1126.436 kb on - strand, within PS417_05070at 1126.436 kb on - strand, within PS417_05070at 1126.470 kb on + strand, within PS417_05070at 1126.506 kb on + strand, within PS417_05070at 1126.506 kb on + strand, within PS417_05070at 1126.507 kb on - strand, within PS417_05070at 1126.722 kb on - strand, within PS417_05070

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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1,124,568 + PS417_05055 0.35 -0.8
1,124,568 + PS417_05055 0.35 -0.9
1,124,691 + PS417_05055 0.82 +0.0
1,124,691 + PS417_05055 0.82 +2.7
1,124,692 - PS417_05055 0.83 +1.9
1,124,763 + -0.1
1,124,763 + +1.0
1,124,764 - -0.0
1,124,814 - -0.1
1,124,870 + -1.6
1,124,870 + +1.0
1,124,920 + +0.4
1,124,922 + -1.1
1,124,923 - -2.0
1,124,923 - +0.6
1,124,996 + +0.4
1,125,049 - -0.6
1,125,049 - +1.3
1,125,212 + PS417_05060 0.41 +1.1
1,125,212 + PS417_05060 0.41 -0.3
1,125,212 + PS417_05060 0.41 +0.6
1,125,242 + PS417_05060 0.47 +1.4
1,125,242 + PS417_05060 0.47 -0.3
1,125,242 + PS417_05060 0.47 +2.2
1,125,260 - PS417_05060 0.51 +0.6
1,125,281 + PS417_05060 0.55 -0.2
1,125,281 + PS417_05060 0.55 -1.0
1,125,282 - PS417_05060 0.55 -0.2
1,125,282 - PS417_05060 0.55 +0.5
1,125,359 + PS417_05060 0.71 -0.5
1,125,359 + PS417_05060 0.71 -0.1
1,125,360 - PS417_05060 0.71 -0.6
1,125,541 + PS417_05065 0.14 -1.1
1,125,541 + PS417_05065 0.14 -0.8
1,125,824 + +3.7
1,125,827 + -0.0
1,125,827 + -0.2
1,125,827 + +0.6
1,125,906 + -0.8
1,125,907 - +0.5
1,125,932 + -0.8
1,125,934 + -0.6
1,125,935 - -0.8
1,126,006 - +1.1
1,126,013 - -0.2
1,126,013 - +0.7
1,126,013 - -1.1
1,126,019 + -1.1
1,126,019 + -0.4
1,126,061 + -1.1
1,126,061 + -1.9
1,126,148 + -2.5
1,126,148 + +3.3
1,126,148 + -0.3
1,126,149 - -0.4
1,126,149 - -0.1
1,126,149 - +0.0
1,126,149 - +0.3
1,126,203 + +0.4
1,126,203 + +1.7
1,126,203 + +0.6
1,126,412 + PS417_05070 0.25 +0.4
1,126,413 - PS417_05070 0.25 +0.1
1,126,416 + PS417_05070 0.25 -0.4
1,126,416 + PS417_05070 0.25 -0.4
1,126,416 + PS417_05070 0.25 +0.3
1,126,416 + PS417_05070 0.25 +0.6
1,126,416 + PS417_05070 0.25 -0.8
1,126,417 - PS417_05070 0.26 -0.9
1,126,435 + +0.1
1,126,436 - PS417_05070 0.27 -1.0
1,126,436 - PS417_05070 0.27 +0.2
1,126,470 + PS417_05070 0.30 -0.0
1,126,506 + PS417_05070 0.32 -0.3
1,126,506 + PS417_05070 0.32 -3.3
1,126,507 - PS417_05070 0.33 -0.6
1,126,722 - PS417_05070 0.49 +1.3

Or see this region's nucleotide sequence