Strain Fitness in Pseudomonas simiae WCS417 around PS417_05000

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
1,109,697	+		PS417_04995	0.10	-0.6
1,109,697	+		PS417_04995	0.10	-2.4
1,109,698	-		PS417_04995	0.11	-1.4
1,109,698	-		PS417_04995	0.11	-0.9
1,109,698	-		PS417_04995	0.11	+0.5
1,109,698	-		PS417_04995	0.11	-1.4
1,109,781	+		PS417_04995	0.19	+4.1
1,109,782	-		PS417_04995	0.20	-0.9
1,109,785	+		PS417_04995	0.20	-1.4
1,109,785	+		PS417_04995	0.20	-0.2
1,109,785	+		PS417_04995	0.20	+0.1
1,109,785	+		PS417_04995	0.20	-2.1
1,109,785	+		PS417_04995	0.20	-0.1
1,109,786	-		PS417_04995	0.20	+0.1
1,109,786	-		PS417_04995	0.20	-0.9
1,110,271	-		PS417_04995	0.72	-0.1
1,110,551	+				+0.4
1,110,552	-				-3.4
1,110,552	-				+2.1
1,110,583	+				-0.2
1,110,669	+				+0.5
1,110,841	+				+0.0
1,110,842	-				+0.4
1,111,061	-		PS417_05000	0.15	+1.2
1,111,375	+		PS417_05000	0.29	-0.6
1,111,464	+		PS417_05000	0.32	-1.4
1,111,661	-		PS417_05000	0.41	-0.8
1,111,870	+		PS417_05000	0.49	-2.8
1,111,871	-		PS417_05000	0.50	-2.3
1,112,263	+		PS417_05000	0.66	-0.8
1,112,263	+		PS417_05000	0.66	-0.5
1,112,263	+		PS417_05000	0.66	-0.9
1,112,263	+		PS417_05000	0.66	+1.0
1,112,264	-		PS417_05000	0.66	-1.0
1,112,264	-		PS417_05000	0.66	+0.1
1,112,264	-		PS417_05000	0.66	-1.0
1,112,264	-		PS417_05000	0.66	-1.0
1,112,289	-		PS417_05000	0.67	-0.0
1,112,350	+		PS417_05000	0.70	-0.2
1,112,377	+		PS417_05000	0.71	+0.2
1,112,593	+				-0.9
1,112,593	+		PS417_05000	0.80	-0.1
1,112,680	+		PS417_05000	0.84	-0.2
1,112,680	+		PS417_05000	0.84	-1.1
1,112,681	-		PS417_05000	0.84	-0.2
1,112,681	-		PS417_05000	0.84	-0.1
1,112,686	+		PS417_05000	0.84	-0.4
1,112,840	-				+2.4
1,112,892	+				-0.0
1,112,893	-				-0.9
1,112,917	+				-3.5
1,112,986	+				+0.4
1,112,987	-				+1.2
1,112,989	+				+0.6
1,112,990	-				+0.3
1,112,990	-				+1.4
1,112,990	-				-1.4
1,113,067	+				+0.0
1,113,067	+				+0.7
1,113,068	-				-2.8
1,113,141	-				+0.4
1,113,295	+		PS417_05005	0.12	-2.1
1,113,295	+		PS417_05005	0.12	+0.9
1,113,296	-		PS417_05005	0.12	-0.3
1,113,451	+		PS417_05005	0.23	-1.6
1,113,452	-		PS417_05005	0.23	-2.6
1,113,619	-		PS417_05005	0.34	-1.8
1,113,619	-				+2.3
1,113,622	+		PS417_05005	0.35	+1.8
1,113,622	+		PS417_05005	0.35	-0.9
1,113,622	+		PS417_05005	0.35	-2.6
1,113,623	-		PS417_05005	0.35	+0.4
1,113,623	-				+2.7
1,113,623	-		PS417_05005	0.35	+0.6
1,113,626	-		PS417_05005	0.35	-2.2
1,113,803	-		PS417_05005	0.47	+0.6