Strain Fitness in Pseudomonas simiae WCS417 around PS417_03990

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03985 and PS417_03990 are separated by 136 nucleotidesPS417_03990 and PS417_03995 are separated by 204 nucleotidesPS417_03995 and PS417_04000 are separated by 2 nucleotides PS417_03985: PS417_03985 - flavodoxin, at 892,714 to 895,239 _03985 PS417_03990: PS417_03990 - ligand-gated channel protein, at 895,376 to 897,661 _03990 PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546 _03995 PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301 _04000 Position (kb) 895 896 897 898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 894.401 kb on + strand, within PS417_03985at 894.404 kb on + strand, within PS417_03985at 894.405 kb on - strand, within PS417_03985at 894.449 kb on + strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.483 kb on + strand, within PS417_03985at 894.503 kb on + strand, within PS417_03985at 894.503 kb on + strandat 894.504 kb on - strand, within PS417_03985at 894.602 kb on + strand, within PS417_03985at 894.602 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.694 kb on - strand, within PS417_03985at 894.908 kb on + strand, within PS417_03985at 894.908 kb on + strand, within PS417_03985at 894.909 kb on - strand, within PS417_03985at 894.909 kb on - strand, within PS417_03985at 894.920 kb on + strand, within PS417_03985at 895.106 kb on - strandat 895.265 kb on - strandat 895.268 kb on + strandat 895.268 kb on + strandat 895.269 kb on - strandat 895.269 kb on - strandat 895.367 kb on + strandat 895.367 kb on + strandat 895.367 kb on + strandat 895.377 kb on + strandat 895.378 kb on - strandat 895.408 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.518 kb on + strandat 895.545 kb on + strandat 895.546 kb on - strandat 895.554 kb on - strandat 895.554 kb on - strandat 895.557 kb on + strandat 895.557 kb on + strandat 895.558 kb on - strandat 895.638 kb on + strand, within PS417_03990at 895.638 kb on + strand, within PS417_03990at 895.761 kb on + strand, within PS417_03990at 895.762 kb on - strand, within PS417_03990at 895.854 kb on + strand, within PS417_03990at 895.854 kb on + strand, within PS417_03990at 896.074 kb on - strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.265 kb on + strand, within PS417_03990at 896.266 kb on - strand, within PS417_03990at 896.266 kb on - strand, within PS417_03990at 896.266 kb on - strand, within PS417_03990at 896.304 kb on + strand, within PS417_03990at 896.304 kb on + strand, within PS417_03990at 896.304 kb on + strand, within PS417_03990at 896.427 kb on + strand, within PS417_03990at 896.427 kb on + strand, within PS417_03990at 896.427 kb on + strand, within PS417_03990at 896.476 kb on - strand, within PS417_03990at 896.476 kb on - strand, within PS417_03990at 896.629 kb on - strand, within PS417_03990at 896.629 kb on - strand, within PS417_03990at 896.629 kb on - strand, within PS417_03990at 896.629 kb on - strand, within PS417_03990at 896.871 kb on + strand, within PS417_03990at 896.874 kb on + strand, within PS417_03990at 896.874 kb on + strand, within PS417_03990at 896.874 kb on + strand, within PS417_03990at 896.875 kb on - strand, within PS417_03990at 896.875 kb on - strand, within PS417_03990at 896.943 kb on + strand, within PS417_03990at 897.246 kb on + strand, within PS417_03990at 897.246 kb on + strand, within PS417_03990at 897.468 kb on + strandat 897.639 kb on - strandat 897.698 kb on + strandat 898.075 kb on + strand, within PS417_03995at 898.075 kb on + strand, within PS417_03995at 898.075 kb on + strand, within PS417_03995at 898.125 kb on - strand, within PS417_03995at 898.125 kb on - strand, within PS417_03995at 898.374 kb on - strand, within PS417_03995at 898.511 kb on + strandat 898.512 kb on - strandat 898.512 kb on - strandat 898.559 kb on + strandat 898.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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894,401 + PS417_03985 0.67 -0.2
894,404 + PS417_03985 0.67 +1.9
894,405 - PS417_03985 0.67 +1.1
894,449 + PS417_03985 0.69 +0.4
894,480 - PS417_03985 0.70 +0.6
894,480 - PS417_03985 0.70 -1.1
894,480 - PS417_03985 0.70 -0.9
894,483 + PS417_03985 0.70 +1.1
894,503 + PS417_03985 0.71 -0.2
894,503 + +2.0
894,504 - PS417_03985 0.71 +0.6
894,602 + PS417_03985 0.75 +0.3
894,602 + PS417_03985 0.75 +1.2
894,693 + PS417_03985 0.78 -1.9
894,693 + PS417_03985 0.78 -1.4
894,693 + PS417_03985 0.78 +0.7
894,694 - PS417_03985 0.78 -1.1
894,908 + PS417_03985 0.87 +0.5
894,908 + PS417_03985 0.87 -1.2
894,909 - PS417_03985 0.87 -0.7
894,909 - PS417_03985 0.87 -0.1
894,920 + PS417_03985 0.87 -1.4
895,106 - -0.2
895,265 - -0.2
895,268 + +0.4
895,268 + +0.5
895,269 - -0.9
895,269 - -1.7
895,367 + +1.4
895,367 + +0.7
895,367 + -1.7
895,377 + +0.5
895,378 - -1.2
895,408 + -1.7
895,458 + -0.6
895,458 + -0.6
895,458 + -0.6
895,458 + -2.0
895,518 + -0.2
895,545 + +0.1
895,546 - -0.0
895,554 - +1.4
895,554 - +0.2
895,557 + -1.6
895,557 + +0.3
895,558 - +1.2
895,638 + PS417_03990 0.11 +1.1
895,638 + PS417_03990 0.11 -0.4
895,761 + PS417_03990 0.17 -1.7
895,762 - PS417_03990 0.17 +0.8
895,854 + PS417_03990 0.21 +0.8
895,854 + PS417_03990 0.21 +1.6
896,074 - PS417_03990 0.31 -0.4
896,082 + PS417_03990 0.31 +0.7
896,082 + PS417_03990 0.31 -1.2
896,082 + PS417_03990 0.31 -0.4
896,082 + PS417_03990 0.31 +1.0
896,082 + PS417_03990 0.31 -2.0
896,082 + PS417_03990 0.31 -1.1
896,083 - PS417_03990 0.31 -0.2
896,083 - PS417_03990 0.31 +0.4
896,083 - PS417_03990 0.31 -0.0
896,083 - PS417_03990 0.31 +0.5
896,265 + PS417_03990 0.39 +0.6
896,266 - PS417_03990 0.39 +1.2
896,266 - PS417_03990 0.39 -3.9
896,266 - PS417_03990 0.39 -0.3
896,304 + PS417_03990 0.41 +0.5
896,304 + PS417_03990 0.41 +0.3
896,304 + PS417_03990 0.41 +0.6
896,427 + PS417_03990 0.46 +0.9
896,427 + PS417_03990 0.46 -0.5
896,427 + PS417_03990 0.46 -0.3
896,476 - PS417_03990 0.48 -1.7
896,476 - PS417_03990 0.48 -1.2
896,629 - PS417_03990 0.55 -1.4
896,629 - PS417_03990 0.55 +0.4
896,629 - PS417_03990 0.55 -2.2
896,629 - PS417_03990 0.55 +0.7
896,871 + PS417_03990 0.65 +0.9
896,874 + PS417_03990 0.66 +0.0
896,874 + PS417_03990 0.66 +0.2
896,874 + PS417_03990 0.66 -0.1
896,875 - PS417_03990 0.66 -0.3
896,875 - PS417_03990 0.66 -1.6
896,943 + PS417_03990 0.69 -0.6
897,246 + PS417_03990 0.82 -0.9
897,246 + PS417_03990 0.82 -0.0
897,468 + -0.0
897,639 - +0.8
897,698 + -1.2
898,075 + PS417_03995 0.31 -0.8
898,075 + PS417_03995 0.31 +1.4
898,075 + PS417_03995 0.31 -0.7
898,125 - PS417_03995 0.38 -1.6
898,125 - PS417_03995 0.38 -0.4
898,374 - PS417_03995 0.75 -0.1
898,511 + -1.2
898,512 - +1.9
898,512 - -0.5
898,559 + +0.2
898,560 - +0.6

Or see this region's nucleotide sequence