Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03420 and PS417_03430 are separated by 576 nucleotides PS417_03430 and PS417_03435 overlap by 4 nucleotides
PS417_03420: PS417_03420 - hypothetical protein, at 784,645 to 788,943
_03420
PS417_03430: PS417_03430 - methyltransferase type 11, at 789,520 to 790,326
_03430
PS417_03435: PS417_03435 - cytochrome P450, at 790,323 to 792,323
_03435
Position (kb) 789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 788.704 kb on + strand at 788.704 kb on + strand at 788.704 kb on + strand at 788.705 kb on - strand at 788.705 kb on - strand at 788.815 kb on + strand at 788.947 kb on + strand at 788.947 kb on + strand at 789.058 kb on - strand at 789.058 kb on - strand at 789.138 kb on + strand at 789.199 kb on + strand at 789.199 kb on + strand at 789.631 kb on + strand, within PS417_03430 at 789.632 kb on - strand, within PS417_03430 at 789.669 kb on + strand, within PS417_03430 at 789.670 kb on - strand, within PS417_03430 at 790.253 kb on + strand at 790.253 kb on - strand at 790.253 kb on - strand at 790.280 kb on + strand at 790.281 kb on - strand at 790.281 kb on - strand at 790.281 kb on - strand at 790.419 kb on + strand at 790.532 kb on + strand, within PS417_03435 at 790.532 kb on + strand, within PS417_03435 at 790.533 kb on - strand, within PS417_03435 at 791.018 kb on - strand, within PS417_03435 at 791.055 kb on + strand, within PS417_03435 at 791.245 kb on - strand, within PS417_03435 at 791.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 788,704 + +0.3 788,704 + -0.6 788,704 + -2.0 788,705 - +1.9 788,705 - -1.7 788,815 + -0.1 788,947 + +1.3 788,947 + -3.3 789,058 - -0.8 789,058 - +0.1 789,138 + -0.1 789,199 + +0.1 789,199 + -0.7 789,631 + PS417_03430 0.14 -1.4 789,632 - PS417_03430 0.14 -2.3 789,669 + PS417_03430 0.18 -0.9 789,670 - PS417_03430 0.19 -0.8 790,253 + -0.4 790,253 - +0.8 790,253 - -0.1 790,280 + +0.6 790,281 - -1.4 790,281 - +1.1 790,281 - -1.4 790,419 + -0.6 790,532 + PS417_03435 0.10 -1.0 790,532 + PS417_03435 0.10 -0.4 790,533 - PS417_03435 0.10 +1.5 791,018 - PS417_03435 0.35 -2.0 791,055 + PS417_03435 0.37 -1.7 791,245 - PS417_03435 0.46 +0.0 791,323 + +0.4
Or see this region's nucleotide sequence