Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03215 and PS417_03220 are separated by 184 nucleotides PS417_03220 and PS417_03225 are separated by 35 nucleotides PS417_03225 and PS417_03230 are separated by 12 nucleotides PS417_03230 and PS417_03235 are separated by 87 nucleotides
PS417_03215: PS417_03215 - 8-oxoguanine deaminase, at 734,907 to 736,262
_03215
PS417_03220: PS417_03220 - short-chain dehydrogenase, at 736,447 to 737,133
_03220
PS417_03225: PS417_03225 - thymidylate synthase, at 737,169 to 737,750
_03225
PS417_03230: PS417_03230 - TetR family transcriptional regulator, at 737,763 to 738,422
_03230
PS417_03235: PS417_03235 - xanthine permease XanP, at 738,510 to 739,904
_03235
Position (kb) 737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 736.358 kb on + strand at 736.358 kb on + strand at 736.358 kb on + strand at 736.358 kb on + strand at 736.364 kb on + strand at 736.364 kb on + strand at 736.364 kb on + strand at 736.381 kb on + strand at 736.381 kb on + strand at 736.382 kb on - strand at 736.388 kb on - strand at 736.432 kb on - strand at 736.448 kb on + strand at 736.505 kb on + strand at 736.506 kb on - strand at 736.685 kb on + strand, within PS417_03220 at 736.686 kb on - strand at 737.179 kb on - strand at 737.231 kb on + strand, within PS417_03225 at 737.231 kb on + strand, within PS417_03225 at 737.232 kb on - strand, within PS417_03225 at 737.232 kb on - strand, within PS417_03225 at 737.232 kb on - strand, within PS417_03225 at 737.232 kb on - strand at 737.412 kb on - strand, within PS417_03225 at 737.412 kb on - strand, within PS417_03225 at 737.530 kb on - strand, within PS417_03225 at 737.688 kb on - strand, within PS417_03225 at 737.688 kb on - strand, within PS417_03225 at 737.706 kb on + strand at 737.750 kb on + strand at 737.751 kb on - strand at 737.813 kb on + strand at 737.893 kb on + strand, within PS417_03230 at 738.197 kb on + strand, within PS417_03230 at 738.197 kb on + strand, within PS417_03230 at 738.198 kb on - strand, within PS417_03230 at 738.212 kb on + strand, within PS417_03230 at 738.212 kb on + strand, within PS417_03230 at 738.214 kb on + strand, within PS417_03230 at 738.214 kb on + strand, within PS417_03230 at 738.214 kb on + strand, within PS417_03230 at 738.215 kb on - strand, within PS417_03230 at 738.238 kb on + strand, within PS417_03230 at 738.239 kb on - strand at 738.239 kb on - strand, within PS417_03230 at 738.241 kb on + strand, within PS417_03230 at 738.241 kb on + strand, within PS417_03230 at 738.241 kb on + strand, within PS417_03230 at 738.241 kb on + strand, within PS417_03230 at 738.241 kb on + strand, within PS417_03230 at 738.242 kb on - strand, within PS417_03230 at 738.242 kb on - strand, within PS417_03230 at 738.463 kb on + strand at 738.502 kb on + strand at 738.582 kb on + strand at 738.659 kb on + strand, within PS417_03235
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 736,358 + -0.3 736,358 + +0.4 736,358 + +0.3 736,358 + +0.1 736,364 + +0.3 736,364 + -0.6 736,364 + +1.9 736,381 + -0.1 736,381 + -2.1 736,382 - -2.9 736,388 - -0.3 736,432 - +0.5 736,448 + -2.7 736,505 + -1.9 736,506 - -0.0 736,685 + PS417_03220 0.35 -2.9 736,686 - +0.5 737,179 - +0.2 737,231 + PS417_03225 0.11 +0.4 737,231 + PS417_03225 0.11 +1.5 737,232 - PS417_03225 0.11 +0.4 737,232 - PS417_03225 0.11 +0.3 737,232 - PS417_03225 0.11 -0.9 737,232 - -0.5 737,412 - PS417_03225 0.42 -1.5 737,412 - PS417_03225 0.42 +0.6 737,530 - PS417_03225 0.62 +2.7 737,688 - PS417_03225 0.89 +0.9 737,688 - PS417_03225 0.89 +1.3 737,706 + -0.2 737,750 + -0.5 737,751 - +0.6 737,813 + -2.1 737,893 + PS417_03230 0.20 +1.5 738,197 + PS417_03230 0.66 +0.1 738,197 + PS417_03230 0.66 -1.0 738,198 - PS417_03230 0.66 +2.6 738,212 + PS417_03230 0.68 -0.9 738,212 + PS417_03230 0.68 -1.5 738,214 + PS417_03230 0.68 -2.9 738,214 + PS417_03230 0.68 -0.6 738,214 + PS417_03230 0.68 -1.9 738,215 - PS417_03230 0.68 -2.7 738,238 + PS417_03230 0.72 +3.6 738,239 - +2.5 738,239 - PS417_03230 0.72 -3.6 738,241 + PS417_03230 0.72 -0.1 738,241 + PS417_03230 0.72 +0.5 738,241 + PS417_03230 0.72 +1.1 738,241 + PS417_03230 0.72 +0.0 738,241 + PS417_03230 0.72 -2.1 738,242 - PS417_03230 0.73 -0.1 738,242 - PS417_03230 0.73 +0.4 738,463 + -0.0 738,502 + -0.4 738,582 + +0.8 738,659 + PS417_03235 0.11 -0.4
Or see this region's nucleotide sequence