Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02980 and PS417_02985 are separated by 53 nucleotides PS417_02985 and PS417_02990 are separated by 298 nucleotides
PS417_02980: PS417_02980 - chemotaxis protein, at 680,503 to 682,464
_02980
PS417_02985: PS417_02985 - diguanylate cyclase, at 682,518 to 684,188
_02985
PS417_02990: PS417_02990 - hypothetical protein, at 684,487 to 685,554
_02990
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 682.006 kb on + strand, within PS417_02980 at 682.359 kb on - strand at 682.599 kb on - strand at 682.840 kb on + strand, within PS417_02985 at 682.919 kb on + strand, within PS417_02985 at 682.919 kb on + strand, within PS417_02985 at 682.920 kb on - strand, within PS417_02985 at 683.035 kb on + strand, within PS417_02985 at 683.036 kb on - strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.230 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.444 kb on - strand, within PS417_02985 at 683.812 kb on + strand, within PS417_02985 at 683.812 kb on + strand, within PS417_02985 at 684.198 kb on - strand at 684.200 kb on + strand at 684.201 kb on - strand at 684.201 kb on - strand at 684.201 kb on - strand at 684.236 kb on - strand at 684.270 kb on + strand at 684.271 kb on - strand at 684.271 kb on - strand at 684.279 kb on - strand at 684.346 kb on + strand at 684.347 kb on - strand at 684.348 kb on + strand at 684.349 kb on - strand at 684.560 kb on - strand at 684.610 kb on + strand, within PS417_02990 at 684.727 kb on + strand, within PS417_02990 at 684.728 kb on - strand, within PS417_02990 at 684.729 kb on + strand, within PS417_02990 at 685.081 kb on + strand, within PS417_02990
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 682,006 + PS417_02980 0.77 +0.7 682,359 - -0.4 682,599 - -0.1 682,840 + PS417_02985 0.19 -0.8 682,919 + PS417_02985 0.24 +1.6 682,919 + PS417_02985 0.24 +2.9 682,920 - PS417_02985 0.24 +0.6 683,035 + PS417_02985 0.31 +1.3 683,036 - PS417_02985 0.31 +0.7 683,209 + PS417_02985 0.41 +0.2 683,209 + PS417_02985 0.41 +1.2 683,209 + PS417_02985 0.41 -0.1 683,209 + PS417_02985 0.41 +1.6 683,209 + PS417_02985 0.41 +1.1 683,209 + PS417_02985 0.41 +1.2 683,230 + PS417_02985 0.43 +1.8 683,287 + PS417_02985 0.46 +2.4 683,287 + PS417_02985 0.46 +1.2 683,287 + PS417_02985 0.46 +1.4 683,287 + PS417_02985 0.46 +1.3 683,287 + PS417_02985 0.46 +1.8 683,287 + PS417_02985 0.46 +1.2 683,287 + PS417_02985 0.46 +1.8 683,287 + PS417_02985 0.46 +2.0 683,288 - PS417_02985 0.46 +1.6 683,288 - PS417_02985 0.46 +1.7 683,288 - PS417_02985 0.46 +0.7 683,288 - PS417_02985 0.46 +0.4 683,444 - PS417_02985 0.55 +1.7 683,812 + PS417_02985 0.77 +1.3 683,812 + PS417_02985 0.77 -0.1 684,198 - +1.2 684,200 + +2.6 684,201 - -1.0 684,201 - +0.1 684,201 - +0.9 684,236 - +0.8 684,270 + +1.0 684,271 - -3.7 684,271 - -3.9 684,279 - -1.3 684,346 + +1.8 684,347 - -3.0 684,348 + -0.1 684,349 - -2.4 684,560 - -2.3 684,610 + PS417_02990 0.12 -0.8 684,727 + PS417_02990 0.22 -0.4 684,728 - PS417_02990 0.23 +3.1 684,729 + PS417_02990 0.23 +0.8 685,081 + PS417_02990 0.56 -0.3
Or see this region's nucleotide sequence