Strain Fitness in Pseudomonas simiae WCS417 around PS417_02975

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02965 and PS417_02970 are separated by 17 nucleotidesPS417_02970 and PS417_02975 are separated by 24 nucleotidesPS417_02975 and PS417_02980 are separated by 314 nucleotides PS417_02965: PS417_02965 - acetyl-CoA carboxylase, at 677,865 to 679,226 _02965 PS417_02970: PS417_02970 - acetyl-CoA carboxylase, at 679,244 to 679,708 _02970 PS417_02975: PS417_02975 - 3-dehydroquinate dehydratase, at 679,733 to 680,188 _02975 PS417_02980: PS417_02980 - chemotaxis protein, at 680,503 to 682,464 _02980 Position (kb) 679 680 681Strain fitness (log2 ratio) -2 -1 0 1 2at 679.843 kb on - strand, within PS417_02975at 679.952 kb on - strand, within PS417_02975at 679.976 kb on - strand, within PS417_02975at 680.046 kb on + strand, within PS417_02975at 680.047 kb on - strand, within PS417_02975at 680.267 kb on - strandat 680.418 kb on - strandat 680.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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679,843 - PS417_02975 0.24 +1.5
679,952 - PS417_02975 0.48 +2.0
679,976 - PS417_02975 0.53 -1.2
680,046 + PS417_02975 0.69 +1.5
680,047 - PS417_02975 0.69 -0.4
680,267 - +0.7
680,418 - +0.1
680,418 - -2.0

Or see this region's nucleotide sequence