Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02775 and PS417_02780 are separated by 238 nucleotides PS417_02780 and PS417_02785 are separated by 73 nucleotides
PS417_02775: PS417_02775 - heat-shock protein, at 630,748 to 632,016
_02775
PS417_02780: PS417_02780 - DNA-binding protein, at 632,255 to 633,199
_02780
PS417_02785: PS417_02785 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 633,273 to 634,973
_02785
Position (kb) 632
633
634 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 631.268 kb on + strand, within PS417_02775 at 631.268 kb on + strand, within PS417_02775 at 631.269 kb on - strand, within PS417_02775 at 631.826 kb on + strand, within PS417_02775 at 631.827 kb on - strand, within PS417_02775 at 631.850 kb on + strand, within PS417_02775 at 631.850 kb on + strand, within PS417_02775 at 632.020 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.078 kb on - strand at 632.138 kb on + strand at 632.259 kb on - strand at 632.270 kb on + strand at 632.271 kb on - strand at 632.273 kb on + strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.633 kb on - strand, within PS417_02780 at 633.092 kb on + strand, within PS417_02780 at 633.093 kb on - strand, within PS417_02780 at 633.757 kb on + strand, within PS417_02785 at 633.758 kb on - strand, within PS417_02785 at 633.758 kb on - strand, within PS417_02785 at 633.769 kb on + strand, within PS417_02785 at 633.770 kb on - strand, within PS417_02785 at 633.857 kb on + strand, within PS417_02785 at 634.165 kb on + strand, within PS417_02785 at 634.166 kb on - strand, within PS417_02785
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 631,268 + PS417_02775 0.41 -1.3 631,268 + PS417_02775 0.41 +0.1 631,269 - PS417_02775 0.41 +0.5 631,826 + PS417_02775 0.85 +1.2 631,827 - PS417_02775 0.85 -1.7 631,850 + PS417_02775 0.87 -0.2 631,850 + PS417_02775 0.87 +0.7 632,020 + -1.1 632,054 + -0.3 632,054 + -0.9 632,054 + -1.4 632,054 + +1.5 632,054 + -2.2 632,055 - +0.4 632,055 - -1.6 632,055 - -0.1 632,055 - -0.2 632,055 - +0.8 632,055 - +0.3 632,078 - +0.3 632,138 + +0.9 632,259 - +0.5 632,270 + +0.0 632,271 - +0.5 632,273 + -0.5 632,274 - +0.5 632,274 - +0.6 632,274 - -0.2 632,411 + PS417_02780 0.17 +0.1 632,411 + PS417_02780 0.17 +0.4 632,411 + PS417_02780 0.17 +0.4 632,412 - PS417_02780 0.17 +4.9 632,412 - PS417_02780 0.17 +1.6 632,633 - PS417_02780 0.40 +0.1 633,092 + PS417_02780 0.89 -0.0 633,093 - PS417_02780 0.89 +1.6 633,757 + PS417_02785 0.28 +2.1 633,758 - PS417_02785 0.29 +0.0 633,758 - PS417_02785 0.29 +0.3 633,769 + PS417_02785 0.29 -0.4 633,770 - PS417_02785 0.29 +0.4 633,857 + PS417_02785 0.34 -0.4 634,165 + PS417_02785 0.52 +0.7 634,166 - PS417_02785 0.52 +0.2
Or see this region's nucleotide sequence