Strain Fitness in Pseudomonas simiae WCS417 around PS417_27720

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,977,295	+		PS417_27710	0.16	+0.3
5,977,438	+		PS417_27710	0.46	+0.2
5,977,439	-		PS417_27710	0.46	+1.7
5,977,554	+		PS417_27710	0.69	-0.5
5,977,650	+		PS417_27710	0.89	+0.1
5,977,650	+		PS417_27710	0.89	+1.3
5,977,651	-		PS417_27710	0.89	+0.1
5,977,651	-		PS417_27710	0.89	-1.2
5,977,651	-		PS417_27710	0.89	-0.5
5,977,652	+		PS417_27710	0.89	-0.5
5,977,719	-				+1.0
5,977,728	-				-2.0
5,977,728	-				+0.3
5,977,757	+				+1.1
5,977,758	-				-0.5
5,977,758	-				+0.5
5,977,758	-				+0.2
5,977,758	-				+0.1
5,977,758	-				-2.3
5,977,874	+		PS417_27715	0.42	+1.9
5,977,874	+		PS417_27715	0.42	+0.4
5,977,875	-		PS417_27715	0.42	-0.3
5,977,875	-		PS417_27715	0.42	+0.3
5,978,089	+				-0.6
5,978,103	+				-0.9
5,978,104	-				-1.5
5,978,225	+				+1.3
5,978,225	+				+0.5
5,978,226	-				+1.3
5,978,229	-				+0.5
5,978,229	-				-0.0
5,978,292	+				-1.3
5,978,292	+				-0.2
5,978,292	+				+2.2
5,978,292	+				+0.3
5,978,292	+				-0.7
5,978,292	+				+0.6
5,978,293	-				-0.1
5,978,293	-				+1.5
5,978,293	-				+0.5
5,978,293	-				+0.4
5,978,293	-				+1.4
5,978,293	-				-1.4
5,978,293	-				-0.8
5,978,293	-				+0.0
5,978,573	+		PS417_27720	0.29	-1.8
5,978,712	-		PS417_27720	0.40	-0.1
5,978,715	+		PS417_27720	0.40	-2.1
5,978,715	+		PS417_27720	0.40	-0.8
5,978,716	-		PS417_27720	0.40	-2.0
5,978,716	-		PS417_27720	0.40	+0.1
5,978,841	-		PS417_27720	0.50	-3.4
5,978,860	-		PS417_27720	0.51	-0.8
5,978,860	-		PS417_27720	0.51	-2.1
5,978,860	-		PS417_27720	0.51	+0.4
5,978,860	-		PS417_27720	0.51	+0.7
5,978,880	+		PS417_27720	0.53	-1.2
5,978,881	-		PS417_27720	0.53	+2.7
5,978,969	+		PS417_27720	0.60	-0.2
5,978,969	+		PS417_27720	0.60	+1.0
5,978,970	-		PS417_27720	0.60	-0.5
5,978,970	-		PS417_27720	0.60	-0.6
5,978,970	-		PS417_27720	0.60	-2.4
5,978,970	-		PS417_27720	0.60	+0.6
5,979,063	-		PS417_27720	0.67	+0.1
5,979,114	-		PS417_27720	0.71	-0.6
5,979,146	+		PS417_27720	0.74	-1.5
5,979,146	+		PS417_27720	0.74	+0.5
5,979,147	-		PS417_27720	0.74	+0.1
5,979,147	-		PS417_27720	0.74	+0.6
5,979,147	-		PS417_27720	0.74	-0.1
5,979,281	+		PS417_27720	0.84	-0.9
5,979,282	-		PS417_27720	0.84	-0.2
5,979,282	-		PS417_27720	0.84	+1.1
5,979,282	-		PS417_27720	0.84	-0.4
5,979,282	-		PS417_27720	0.84	+0.2
5,979,282	-		PS417_27720	0.84	+0.0
5,979,285	-		PS417_27720	0.84	-0.6
5,979,285	-				-0.5
5,979,285	-		PS417_27720	0.84	-0.4
5,979,285	-		PS417_27720	0.84	-2.0
5,979,285	-		PS417_27720	0.84	-0.9
5,979,682	-		PS417_27725	0.86	-1.3
5,979,803	+				+0.3
5,979,803	+				+0.6
5,979,803	+				-0.1
5,979,804	-				-1.3
5,979,807	+				+1.4
5,979,807	+				+0.6
5,979,808	-				+1.0
5,979,814	-				-1.2
5,979,820	+				-0.5
5,979,821	-				-2.2
5,979,821	-				-0.1
5,979,851	-				+0.8
5,979,851	-				+0.4
5,979,939	-				+1.3
5,979,967	-				+1.5
5,980,161	+		PS417_27730	0.20	-0.3
5,980,162	-		PS417_27730	0.20	+1.1
5,980,162	-		PS417_27730	0.20	+0.1
5,980,201	-		PS417_27730	0.22	-1.3
5,980,201	-		PS417_27730	0.22	+0.5
5,980,227	+		PS417_27730	0.24	+0.2
5,980,228	-		PS417_27730	0.24	-0.1
5,980,228	-		PS417_27730	0.24	+0.7
5,980,291	-		PS417_27730	0.29	+0.9
5,980,301	+		PS417_27730	0.29	+0.7
5,980,304	+		PS417_27730	0.30	-0.4
5,980,305	-		PS417_27730	0.30	-1.7