Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02700 and PS417_02705 are separated by 13 nucleotides PS417_02705 and PS417_02710 overlap by 4 nucleotides PS417_02710 and PS417_02715 are separated by 276 nucleotides PS417_02715 and PS417_02720 are separated by 5 nucleotides
PS417_02700: PS417_02700 - urease accessory protein UreG, at 617,557 to 618,171
_02700
PS417_02705: PS417_02705 - urease accessory protein UreF, at 618,185 to 618,859
_02705
PS417_02710: PS417_02710 - Urease maturation and nickel insertion protein UreE <small>(from data)</small>, at 618,856 to 619,356
_02710
PS417_02715: PS417_02715 - hypothetical protein, at 619,633 to 620,130
_02715
PS417_02720: PS417_02720 - TetR family transcriptional regulator, at 620,136 to 620,768
_02720
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 618.044 kb on + strand, within PS417_02700 at 618.044 kb on + strand, within PS417_02700 at 618.045 kb on - strand, within PS417_02700 at 618.075 kb on - strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.197 kb on + strand at 618.582 kb on + strand, within PS417_02705 at 618.583 kb on - strand, within PS417_02705 at 618.677 kb on + strand, within PS417_02705 at 618.796 kb on - strand at 618.898 kb on + strand at 619.022 kb on + strand, within PS417_02710 at 619.022 kb on + strand, within PS417_02710 at 619.023 kb on - strand, within PS417_02710 at 619.023 kb on - strand, within PS417_02710 at 619.089 kb on - strand, within PS417_02710 at 619.163 kb on - strand, within PS417_02710 at 619.372 kb on + strand at 619.373 kb on - strand at 619.390 kb on + strand at 619.391 kb on - strand at 619.391 kb on - strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.579 kb on + strand at 619.579 kb on + strand at 619.579 kb on + strand at 619.580 kb on - strand at 619.595 kb on - strand at 619.595 kb on - strand at 619.613 kb on - strand at 619.613 kb on - strand at 619.670 kb on + strand at 619.670 kb on + strand at 619.785 kb on + strand, within PS417_02715 at 619.792 kb on + strand, within PS417_02715 at 619.792 kb on + strand, within PS417_02715 at 619.793 kb on - strand, within PS417_02715 at 619.793 kb on - strand at 619.849 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.006 kb on - strand, within PS417_02715 at 620.006 kb on - strand, within PS417_02715 at 620.007 kb on + strand, within PS417_02715 at 620.008 kb on - strand, within PS417_02715 at 620.008 kb on - strand, within PS417_02715 at 620.009 kb on + strand, within PS417_02715 at 620.009 kb on + strand, within PS417_02715 at 620.010 kb on - strand, within PS417_02715 at 620.080 kb on + strand, within PS417_02715 at 620.081 kb on - strand at 620.095 kb on + strand at 620.095 kb on + strand at 620.095 kb on + strand at 620.138 kb on - strand at 620.183 kb on + strand at 620.183 kb on + strand at 620.183 kb on + strand at 620.184 kb on - strand at 620.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 618,044 + PS417_02700 0.79 -0.8 618,044 + PS417_02700 0.79 -2.1 618,045 - PS417_02700 0.79 -0.4 618,075 - -0.5 618,171 + -0.6 618,171 + -0.0 618,171 + -0.6 618,171 + +0.2 618,171 + -2.5 618,172 - -0.5 618,172 - +0.3 618,172 - -0.3 618,172 - +1.0 618,197 + -0.4 618,582 + PS417_02705 0.59 +0.6 618,583 - PS417_02705 0.59 +0.1 618,677 + PS417_02705 0.73 -0.2 618,796 - +0.9 618,898 + +0.0 619,022 + PS417_02710 0.33 +0.8 619,022 + PS417_02710 0.33 +0.7 619,023 - PS417_02710 0.33 -0.8 619,023 - PS417_02710 0.33 +2.2 619,089 - PS417_02710 0.47 +1.5 619,163 - PS417_02710 0.61 +0.7 619,372 + +0.8 619,373 - -0.6 619,390 + +0.0 619,391 - +0.5 619,391 - -0.8 619,436 + -2.2 619,436 + -1.8 619,436 + -0.2 619,436 + -0.2 619,579 + +0.1 619,579 + +0.8 619,579 + -1.0 619,580 - +1.1 619,595 - +0.1 619,595 - -0.2 619,613 - +0.1 619,613 - -0.4 619,670 + +1.7 619,670 + -2.1 619,785 + PS417_02715 0.31 -2.2 619,792 + PS417_02715 0.32 -0.1 619,792 + PS417_02715 0.32 +1.2 619,793 - PS417_02715 0.32 -0.6 619,793 - -0.5 619,849 + PS417_02715 0.43 -0.2 620,005 + PS417_02715 0.75 +0.0 620,005 + PS417_02715 0.75 -2.1 620,005 + PS417_02715 0.75 +0.9 620,005 + PS417_02715 0.75 -2.3 620,005 + PS417_02715 0.75 +0.2 620,005 + PS417_02715 0.75 -1.2 620,005 + PS417_02715 0.75 -0.4 620,005 + PS417_02715 0.75 -0.3 620,006 - PS417_02715 0.75 +2.7 620,006 - PS417_02715 0.75 +0.1 620,007 + PS417_02715 0.75 -1.2 620,008 - PS417_02715 0.75 -0.0 620,008 - PS417_02715 0.75 +0.7 620,009 + PS417_02715 0.76 +2.2 620,009 + PS417_02715 0.76 +0.9 620,010 - PS417_02715 0.76 -0.0 620,080 + PS417_02715 0.90 +0.4 620,081 - -3.2 620,095 + +0.2 620,095 + -3.2 620,095 + +0.3 620,138 - -0.2 620,183 + +0.3 620,183 + +0.5 620,183 + -1.1 620,184 - -0.1 620,184 - +2.5
Or see this region's nucleotide sequence