Strain Fitness in Pseudomonas simiae WCS417 around PS417_27225

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,877,103	-		PS417_27220	0.48	+0.5
5,877,300	-		PS417_27220	0.60	-0.3
5,877,300	-		PS417_27220	0.60	+1.5
5,877,553	+		PS417_27220	0.75	+2.3
5,877,553	+		PS417_27220	0.75	-0.5
5,877,554	-		PS417_27220	0.75	-3.3
5,877,608	+		PS417_27220	0.78	-0.6
5,877,609	-		PS417_27220	0.78	+0.3
5,877,817	-				-2.1
5,877,850	+				-3.2
5,877,850	+				+0.0
5,877,850	+				-0.7
5,877,851	-				+0.1
5,877,851	-				+0.1
5,877,915	+				-0.4
5,877,919	-				-1.1
5,877,998	+				-0.7
5,877,998	+				+0.6
5,877,999	-				-1.3
5,878,036	+				+1.7
5,878,065	-				-3.1
5,878,065	-				-0.1
5,878,101	-				+0.9
5,878,101	-				-0.6
5,878,101	-				+1.5
5,878,101	-				-1.1
5,878,481	+		PS417_27225	0.47	-1.1
5,878,481	+		PS417_27225	0.47	-0.2
5,878,482	-		PS417_27225	0.47	-0.0
5,878,811	-		PS417_27225	0.83	-0.0
5,878,828	+		PS417_27225	0.85	-1.9
5,878,828	+		PS417_27225	0.85	-0.9
5,879,030	-		PS417_27230	0.11	+2.5
5,879,053	-		PS417_27230	0.17	+0.8
5,879,155	-		PS417_27230	0.39	+0.2
5,879,189	+		PS417_27230	0.47	+0.7
5,879,189	+		PS417_27230	0.47	-0.8
5,879,316	+		PS417_27230	0.75	+1.5
5,879,453	+				+1.6
5,879,453	+				-0.8
5,879,453	+				-1.0
5,879,453	+				-0.1
5,879,453	+				+0.2
5,879,454	-				-0.1
5,879,454	-				+1.9
5,879,454	-				+0.1
5,879,461	+				+2.6
5,879,466	+				-0.1
5,879,467	-				+0.1
5,879,467	-				-0.1
5,879,472	+				-0.1
5,879,507	+				-2.4
5,879,612	+		PS417_27235	0.37	-0.4
5,879,613	-		PS417_27235	0.37	-1.8
5,879,807	+				+0.1
5,879,808	-				-1.0
5,879,889	+				-2.4
5,879,890	-				+0.5
5,879,890	-				+0.2
5,879,893	+				+0.2
5,879,893	+				-2.0
5,879,893	+				-3.1
5,879,893	+				-0.2
5,879,893	+				+1.0
5,879,893	+				+1.0
5,879,894	-				-0.3
5,879,894	-				-1.2
5,879,894	-				-1.7
5,879,894	-				+0.4
5,879,894	-				-0.2
5,879,919	+				-1.0
5,879,963	-				-1.8
5,879,963	-				+2.1