Strain Fitness in Pseudomonas simiae WCS417 around PS417_27180

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,866,350	+				-0.8
5,866,350	+				-0.2
5,866,350	+				-0.5
5,866,350	+				-0.3
5,866,378	-				-1.4
5,866,394	+				-0.1
5,866,394	+				+0.5
5,866,475	+		PS417_27175	0.14	-0.4
5,866,579	-		PS417_27175	0.31	-1.3
5,866,579	-		PS417_27175	0.31	-1.9
5,866,579	-		PS417_27175	0.31	-1.5
5,866,631	+		PS417_27175	0.40	+1.4
5,866,632	-		PS417_27175	0.40	+0.9
5,866,757	+		PS417_27175	0.61	+0.4
5,866,871	-		PS417_27175	0.80	-0.9
5,866,877	+		PS417_27175	0.81	+0.7
5,867,055	-				-0.1
5,867,199	+				+0.3
5,867,199	+				+0.3
5,867,240	+				+1.8
5,867,527	-		PS417_27180	0.35	-0.7
5,867,620	-		PS417_27180	0.50	-4.5
5,867,620	-		PS417_27180	0.50	-2.0
5,867,933	+				-0.5
5,867,965	-				+0.5
5,868,062	+				+0.0
5,868,062	+				-0.3
5,868,063	-				+0.4
5,868,119	+				-4.3
5,868,119	+				+1.7
5,868,119	+				-1.8
5,868,154	+				+2.5
5,868,209	-				-1.1
5,868,216	+				+0.0
5,868,216	+				+0.6
5,868,296	-				-0.1
5,868,412	+		PS417_27185	0.14	-0.6
5,868,412	+		PS417_27185	0.14	-0.5
5,868,412	+		PS417_27185	0.14	-1.7
5,868,416	+		PS417_27185	0.15	+0.5
5,868,416	+				+3.6
5,868,417	-		PS417_27185	0.15	-0.3
5,868,444	+		PS417_27185	0.17	-3.6
5,868,514	+		PS417_27185	0.22	+0.2
5,868,515	-		PS417_27185	0.22	+1.3
5,868,564	+		PS417_27185	0.26	+0.2
5,868,565	-		PS417_27185	0.26	-2.0
5,868,660	+				+0.5
5,868,660	+		PS417_27185	0.33	+1.2
5,868,660	+		PS417_27185	0.33	+0.9
5,868,678	+		PS417_27185	0.34	-0.8
5,868,723	+		PS417_27185	0.37	+0.6
5,868,723	+		PS417_27185	0.37	+0.9
5,868,741	+		PS417_27185	0.39	+3.7
5,868,742	-		PS417_27185	0.39	-0.5
5,868,786	+		PS417_27185	0.42	+1.0
5,868,787	-		PS417_27185	0.42	+1.5
5,868,787	-		PS417_27185	0.42	-0.7
5,868,859	-		PS417_27185	0.47	+0.8
5,868,879	+		PS417_27185	0.49	+0.9
5,868,880	-		PS417_27185	0.49	-0.8
5,868,882	+		PS417_27185	0.49	-0.5
5,868,882	+		PS417_27185	0.49	-1.3
5,868,882	+		PS417_27185	0.49	+1.0
5,868,883	-		PS417_27185	0.49	-0.3
5,868,883	-		PS417_27185	0.49	+2.4
5,868,883	-		PS417_27185	0.49	-0.7
5,868,883	-		PS417_27185	0.49	+0.1
5,868,916	-		PS417_27185	0.51	+1.1
5,868,916	-		PS417_27185	0.51	+2.2
5,868,930	+		PS417_27185	0.52	-2.5
5,868,930	+		PS417_27185	0.52	-0.6
5,868,931	-		PS417_27185	0.52	+1.0