Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02690 and PS417_02695 are separated by 181 nucleotides PS417_02695 and PS417_02700 are separated by 22 nucleotides PS417_02700 and PS417_02705 are separated by 13 nucleotides
PS417_02690: PS417_02690 - N-acylglucosamine 2-epimerase, at 615,662 to 616,780
_02690
PS417_02695: PS417_02695 - protein hupE, at 616,962 to 617,534
_02695
PS417_02700: PS417_02700 - urease accessory protein UreG, at 617,557 to 618,171
_02700
PS417_02705: PS417_02705 - urease accessory protein UreF, at 618,185 to 618,859
_02705
Position (kb) 616
617
618 Strain fitness (log2 ratio) -2
-1
0
1 at 616.087 kb on + strand, within PS417_02690 at 616.088 kb on - strand, within PS417_02690 at 616.303 kb on - strand, within PS417_02690 at 616.480 kb on - strand, within PS417_02690 at 616.596 kb on + strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.671 kb on + strand at 616.808 kb on - strand at 616.808 kb on - strand at 616.890 kb on + strand at 616.890 kb on + strand at 616.904 kb on - strand at 617.311 kb on - strand, within PS417_02695 at 617.807 kb on + strand, within PS417_02700 at 617.808 kb on - strand, within PS417_02700 at 617.808 kb on - strand, within PS417_02700 at 618.044 kb on + strand, within PS417_02700 at 618.044 kb on + strand, within PS417_02700 at 618.045 kb on - strand, within PS417_02700 at 618.075 kb on - strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.197 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 616,087 + PS417_02690 0.38 -1.9 616,088 - PS417_02690 0.38 -2.3 616,303 - PS417_02690 0.57 +0.1 616,480 - PS417_02690 0.73 -0.4 616,596 + PS417_02690 0.83 -0.9 616,597 - PS417_02690 0.84 +0.2 616,597 - PS417_02690 0.84 +0.8 616,671 + +1.1 616,808 - -0.5 616,808 - +0.7 616,890 + +0.6 616,890 + -0.2 616,904 - +0.9 617,311 - PS417_02695 0.61 -0.9 617,807 + PS417_02700 0.41 +0.6 617,808 - PS417_02700 0.41 +0.1 617,808 - PS417_02700 0.41 -1.8 618,044 + PS417_02700 0.79 -0.8 618,044 + PS417_02700 0.79 -2.1 618,045 - PS417_02700 0.79 -0.4 618,075 - -0.5 618,171 + -0.6 618,171 + -0.0 618,171 + -0.6 618,171 + +0.2 618,171 + -2.5 618,172 - -0.5 618,172 - +0.3 618,172 - -0.3 618,172 - +1.0 618,197 + -0.4
Or see this region's nucleotide sequence