Strain Fitness in Pseudomonas simiae WCS417 around PS417_25885

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,590,161	-				+0.2
5,590,266	-				-1.2
5,590,266	-				-2.3
5,590,435	+				-0.3
5,590,576	+				-1.6
5,590,577	-				-0.6
5,590,577	-				-0.0
5,590,577	-				+1.4
5,590,667	-		PS417_25885	0.11	-1.4
5,590,688	+		PS417_25885	0.12	-0.3
5,590,696	+		PS417_25885	0.12	-0.8
5,590,696	+		PS417_25885	0.12	+0.0
5,590,864	+		PS417_25885	0.17	-0.6
5,590,864	+		PS417_25885	0.17	-0.5
5,590,865	-		PS417_25885	0.17	+0.7
5,591,050	+		PS417_25885	0.22	-0.2
5,591,051	-		PS417_25885	0.22	-2.9
5,591,051	-		PS417_25885	0.22	+1.8
5,591,243	-		PS417_25885	0.27	+0.4
5,591,243	-		PS417_25885	0.27	+0.6
5,591,248	+		PS417_25885	0.27	-0.0
5,591,248	+		PS417_25885	0.27	-1.4
5,591,248	+		PS417_25885	0.27	+1.4
5,591,249	-		PS417_25885	0.27	-0.2
5,591,249	-		PS417_25885	0.27	-0.4
5,591,249	-		PS417_25885	0.27	+0.8
5,591,249	-		PS417_25885	0.27	-2.3
5,591,274	-		PS417_25885	0.28	-2.6
5,591,359	+		PS417_25885	0.30	-0.8
5,591,360	-		PS417_25885	0.30	+1.1
5,591,463	-		PS417_25885	0.33	-2.0
5,591,654	+		PS417_25885	0.38	-0.3
5,591,655	-		PS417_25885	0.38	+0.6
5,591,655	-		PS417_25885	0.38	+0.5
5,591,704	-		PS417_25885	0.39	+0.2
5,592,156	+		PS417_25885	0.51	+1.7
5,592,157	-		PS417_25885	0.51	+0.7
5,592,157	-		PS417_25885	0.51	+0.6
5,592,157	-		PS417_25885	0.51	-0.6
5,592,158	+		PS417_25885	0.51	+0.1
5,592,158	+		PS417_25885	0.51	-2.4
5,592,159	-		PS417_25885	0.51	-1.0
5,592,159	-		PS417_25885	0.51	-0.3
5,592,159	-		PS417_25885	0.51	-1.2
5,592,159	-		PS417_25885	0.51	+0.5
5,592,159	-		PS417_25885	0.51	+0.5
5,592,326	+		PS417_25885	0.56	+1.0
5,592,326	+		PS417_25885	0.56	-0.4
5,592,326	+				+0.4
5,592,326	+		PS417_25885	0.56	-0.6
5,592,327	-		PS417_25885	0.56	+0.4
5,592,327	-		PS417_25885	0.56	-0.2
5,592,327	-		PS417_25885	0.56	-4.1
5,593,046	+		PS417_25885	0.75	+1.6
5,593,046	+		PS417_25885	0.75	+1.3
5,593,046	+		PS417_25885	0.75	+0.1
5,593,047	-		PS417_25885	0.75	+0.1
5,593,047	-		PS417_25885	0.75	+1.4
5,593,047	-		PS417_25885	0.75	-1.6
5,593,049	-		PS417_25885	0.75	-0.3
5,593,144	+		PS417_25885	0.77	+0.1
5,593,144	+		PS417_25885	0.77	-1.4
5,593,144	+		PS417_25885	0.77	-2.2
5,593,145	-		PS417_25885	0.78	-0.7
5,593,145	-		PS417_25885	0.78	-0.3
5,593,147	-		PS417_25885	0.78	+1.7
5,593,147	-		PS417_25885	0.78	-1.1
5,593,237	+		PS417_25885	0.80	+0.3
5,593,322	+		PS417_25885	0.82	-0.4
5,593,339	-		PS417_25885	0.83	+1.4
5,593,339	-		PS417_25885	0.83	-3.3
5,593,493	+		PS417_25885	0.87	+0.3
5,593,525	+		PS417_25885	0.88	+0.1
5,593,631	+				-0.2
5,593,678	+				-0.2
5,593,679	-				+1.0
5,593,936	-				+0.7
5,593,936	-				+0.3
5,593,982	+				-2.3
5,594,487	-		PS417_25895	0.85	+1.2
5,594,514	-				-1.1
5,594,514	-				+0.5
5,594,573	+				+0.4
5,594,573	+				-0.6
5,594,573	+				+1.4
5,594,573	+				+0.6
5,594,574	-				-0.8
5,594,574	-				+1.0
5,594,574	-				+3.0
5,594,588	+				-0.2