Strain Fitness in Pseudomonas simiae WCS417 around PS417_25875

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25865 and PS417_25870 are separated by 109 nucleotidesPS417_25870 and PS417_25875 are separated by 361 nucleotidesPS417_25875 and PS417_25880 are separated by 67 nucleotides PS417_25865: PS417_25865 - UGMP family protein, at 5,584,341 to 5,585,366 _25865 PS417_25870: PS417_25870 - hypothetical protein, at 5,585,476 to 5,585,868 _25870 PS417_25875: PS417_25875 - DNA primase, at 5,586,230 to 5,588,203 _25875 PS417_25880: PS417_25880 - RNA polymerase subunit sigma-70, at 5,588,271 to 5,590,121 _25880 Position (kb) 5586 5587 5588 5589Strain fitness (log2 ratio) -1 0 1at 5585.409 kb on + strandat 5585.957 kb on + strandat 5585.957 kb on + strandat 5586.100 kb on + strandat 5588.209 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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5,585,409 + -0.2
5,585,957 + -1.7
5,585,957 + +0.1
5,586,100 + +0.4
5,588,209 + -1.2

Or see this region's nucleotide sequence