Strain Fitness in Pseudomonas simiae WCS417 around PS417_25180

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,458,019	+				+0.4
5,458,020	-				-0.2
5,458,070	-				-0.8
5,458,127	-				-0.2
5,458,187	-				+2.3
5,458,262	+				+0.4
5,458,277	+				+0.8
5,458,278	-				+0.1
5,458,327	-				+0.1
5,458,345	+				+0.9
5,458,349	+				+0.4
5,458,349	+				-1.2
5,458,349	+				-0.2
5,458,350	-				+1.7
5,458,350	-				-1.2
5,458,405	-				+1.6
5,458,475	+				-0.5
5,458,480	-				-0.2
5,458,506	-				-0.0
5,458,580	-				+0.5
5,458,612	-				+1.4
5,458,612	-				-1.9
5,458,621	+				-0.4
5,458,722	+				+0.5
5,458,723	-				+0.3
5,458,724	+				-0.4
5,458,724	+				-0.6
5,458,740	+				+0.0
5,458,750	+				-1.7
5,458,835	-				-0.4
5,458,991	-				-0.6
5,459,026	+				+0.3
5,459,026	+				-0.3
5,459,026	+				+0.8
5,459,026	+				+0.5
5,459,026	+				+0.1
5,459,027	-				-0.2
5,459,027	-				-2.6
5,459,169	-		PS417_25180	0.25	-1.4
5,459,182	-		PS417_25180	0.27	-1.1
5,459,351	+		PS417_25180	0.54	-1.0
5,459,352	-		PS417_25180	0.54	-0.9
5,459,352	-		PS417_25180	0.54	-0.6
5,459,446	-		PS417_25180	0.69	-3.7
5,459,642	-				-2.0
5,459,663	+				-2.3
5,459,664	-				+0.0
5,459,664	-				+1.2
5,459,664	-				+1.0
5,459,702	+				-0.3
5,459,717	-				+0.4
5,459,717	-				+0.4
5,459,719	+				+0.2
5,459,719	+				+1.4
5,459,719	+				+0.0
5,459,720	-				+1.3
5,459,757	-				+0.3
5,459,757	-				-0.2
5,459,803	-				-0.2
5,459,843	+				-3.9
5,459,844	-				+0.8
5,459,911	+		PS417_25185	0.20	-1.2
5,459,911	+		PS417_25185	0.20	-1.5
5,459,944	+		PS417_25185	0.26	-0.3
5,459,944	+		PS417_25185	0.26	-0.8
5,459,944	+		PS417_25185	0.26	+1.1
5,459,944	+		PS417_25185	0.26	-0.6
5,459,944	+		PS417_25185	0.26	+0.4
5,459,944	+		PS417_25185	0.26	-1.2
5,459,944	+		PS417_25185	0.26	-0.2
5,459,945	-		PS417_25185	0.26	-0.1
5,459,945	-		PS417_25185	0.26	-2.0
5,459,945	-		PS417_25185	0.26	-1.5
5,459,945	-		PS417_25185	0.26	-0.1
5,459,945	-		PS417_25185	0.26	+0.4
5,459,945	-		PS417_25185	0.26	+1.2
5,459,945	-		PS417_25185	0.26	-3.5
5,459,945	-		PS417_25185	0.26	-2.5
5,459,945	-		PS417_25185	0.26	-0.8
5,459,945	-		PS417_25185	0.26	-0.3
5,459,945	-		PS417_25185	0.26	+1.6
5,459,945	-		PS417_25185	0.26	-0.7
5,459,958	+		PS417_25185	0.28	-1.2
5,459,959	-		PS417_25185	0.29	-0.9
5,460,019	+		PS417_25185	0.39	-0.1
5,460,020	-		PS417_25185	0.39	-0.2
5,460,020	-		PS417_25185	0.39	-1.4
5,460,020	-		PS417_25185	0.39	-1.0
5,460,020	-		PS417_25185	0.39	+0.1
5,460,020	-		PS417_25185	0.39	-0.1
5,460,052	+		PS417_25185	0.45	+1.3
5,460,052	+		PS417_25185	0.45	+0.3
5,460,053	-		PS417_25185	0.45	-1.4
5,460,125	-		PS417_25185	0.58	-0.6
5,460,199	+		PS417_25185	0.71	-0.6
5,460,199	+		PS417_25185	0.71	+0.2
5,460,200	-		PS417_25185	0.71	-0.7
5,460,200	-		PS417_25185	0.71	+0.4
5,460,398	+				-1.0
5,460,398	+				-3.2
5,460,398	+				+0.2
5,460,399	-				-1.7
5,460,399	-				+0.4
5,460,399	-				-0.6
5,460,399	-				+2.1
5,460,399	-				-2.5