Strain Fitness in Pseudomonas simiae WCS417 around PS417_25155
Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | JP1 MOI 1 |
---|---|---|---|---|---|
remove | |||||
5,451,621 | + | -0.5 | |||
5,451,662 | - | +0.1 | |||
5,451,765 | + | -0.2 | |||
5,451,767 | + | -1.4 | |||
5,451,767 | + | +0.7 | |||
5,451,767 | + | +0.2 | |||
5,451,768 | - | +0.6 | |||
5,451,768 | - | -0.6 | |||
5,451,768 | - | +1.8 | |||
5,451,768 | - | +1.1 | |||
5,451,768 | - | -2.3 | |||
5,451,768 | - | -2.0 | |||
5,451,768 | - | +0.2 | |||
5,451,809 | + | +2.7 | |||
5,451,842 | + | -0.0 | |||
5,451,842 | + | -2.0 | |||
5,451,879 | + | -1.2 | |||
5,451,913 | + | +0.3 | |||
5,451,913 | + | +0.2 | |||
5,452,087 | - | PS417_25145 | 0.28 | +0.0 | |
5,452,115 | + | PS417_25145 | 0.39 | -0.0 | |
5,452,289 | + | +0.3 | |||
5,452,357 | - | -2.2 | |||
5,452,377 | + | -0.2 | |||
5,452,378 | - | -0.9 | |||
5,452,518 | - | PS417_25155 | 0.29 | -1.0 | |
5,452,518 | - | PS417_25155 | 0.29 | -1.0 | |
5,452,694 | - | -1.0 | |||
5,452,795 | + | +2.4 | |||
5,452,868 | + | +0.4 | |||
5,452,994 | + | -0.6 | |||
5,452,995 | - | +0.6 | |||
5,453,145 | + | -0.8 | |||
5,453,279 | + | +1.0 | |||
5,453,295 | + | -0.3 | |||
5,453,296 | - | +3.0 | |||
5,453,302 | - | +3.5 | |||
5,453,330 | - | -1.8 | |||
5,453,475 | + | PS417_25160 | 0.12 | +0.1 | |
5,453,488 | + | PS417_25160 | 0.14 | -0.7 | |
5,453,552 | + | PS417_25160 | 0.26 | +1.4 | |
5,453,618 | + | PS417_25160 | 0.39 | -0.2 | |
5,453,618 | + | PS417_25160 | 0.39 | -0.9 | |
5,453,646 | + | PS417_25160 | 0.44 | -0.4 | |
5,453,672 | - | +0.4 |
Or see this region's nucleotide sequence