Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25065 and PS417_25070 overlap by 1 nucleotides PS417_25070 and PS417_25075 overlap by 16 nucleotides PS417_25075 and PS417_25080 are separated by 74 nucleotides
PS417_25065: PS417_25065 - hypothetical protein, at 5,435,434 to 5,436,585
_25065
PS417_25070: PS417_25070 - hypothetical protein, at 5,436,585 to 5,437,670
_25070
PS417_25075: PS417_25075 - hypothetical protein, at 5,437,655 to 5,438,221
_25075
PS417_25080: PS417_25080 - hypothetical protein, at 5,438,296 to 5,439,393
_25080
Position (kb)
5436
5437
5438 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5435.591 kb on - strand, within PS417_25065 at 5435.599 kb on + strand, within PS417_25065 at 5435.599 kb on + strand, within PS417_25065 at 5435.683 kb on - strand, within PS417_25065 at 5435.683 kb on - strand, within PS417_25065 at 5435.683 kb on - strand, within PS417_25065 at 5435.683 kb on - strand, within PS417_25065 at 5435.702 kb on + strand, within PS417_25065 at 5435.703 kb on - strand, within PS417_25065 at 5435.703 kb on - strand, within PS417_25065 at 5435.755 kb on + strand, within PS417_25065 at 5435.756 kb on - strand, within PS417_25065 at 5435.756 kb on - strand, within PS417_25065 at 5435.756 kb on - strand, within PS417_25065 at 5435.805 kb on - strand, within PS417_25065 at 5435.805 kb on - strand, within PS417_25065 at 5435.836 kb on + strand, within PS417_25065 at 5435.918 kb on + strand, within PS417_25065 at 5435.919 kb on - strand, within PS417_25065 at 5435.919 kb on - strand, within PS417_25065 at 5436.021 kb on + strand, within PS417_25065 at 5436.022 kb on - strand, within PS417_25065 at 5436.034 kb on + strand, within PS417_25065 at 5436.034 kb on + strand, within PS417_25065 at 5436.098 kb on + strand, within PS417_25065 at 5436.130 kb on - strand, within PS417_25065 at 5436.176 kb on + strand, within PS417_25065 at 5436.298 kb on + strand, within PS417_25065 at 5436.298 kb on + strand, within PS417_25065 at 5436.299 kb on - strand, within PS417_25065 at 5436.299 kb on - strand, within PS417_25065 at 5436.372 kb on + strand, within PS417_25065 at 5436.373 kb on - strand, within PS417_25065 at 5436.373 kb on - strand, within PS417_25065 at 5436.374 kb on + strand, within PS417_25065 at 5436.375 kb on - strand, within PS417_25065 at 5436.460 kb on - strand, within PS417_25065 at 5436.460 kb on - strand, within PS417_25065 at 5436.494 kb on + strand at 5436.495 kb on - strand at 5436.549 kb on - strand at 5436.587 kb on - strand at 5436.602 kb on - strand at 5436.736 kb on + strand, within PS417_25070 at 5436.736 kb on + strand, within PS417_25070 at 5436.737 kb on - strand, within PS417_25070 at 5436.737 kb on - strand, within PS417_25070 at 5436.737 kb on - strand, within PS417_25070 at 5436.749 kb on - strand, within PS417_25070 at 5436.773 kb on - strand, within PS417_25070 at 5436.881 kb on - strand, within PS417_25070 at 5436.881 kb on - strand, within PS417_25070 at 5436.884 kb on - strand, within PS417_25070 at 5436.884 kb on - strand, within PS417_25070 at 5436.924 kb on + strand, within PS417_25070 at 5436.924 kb on + strand, within PS417_25070 at 5436.924 kb on + strand, within PS417_25070 at 5436.924 kb on + strand, within PS417_25070 at 5436.924 kb on + strand, within PS417_25070 at 5436.924 kb on + strand, within PS417_25070 at 5436.925 kb on - strand, within PS417_25070 at 5436.925 kb on - strand, within PS417_25070 at 5436.925 kb on - strand at 5436.925 kb on - strand, within PS417_25070 at 5437.001 kb on + strand, within PS417_25070 at 5437.001 kb on + strand, within PS417_25070 at 5437.002 kb on - strand, within PS417_25070 at 5437.002 kb on - strand, within PS417_25070 at 5437.029 kb on + strand, within PS417_25070 at 5437.029 kb on + strand, within PS417_25070 at 5437.029 kb on + strand, within PS417_25070 at 5437.029 kb on + strand, within PS417_25070 at 5437.029 kb on + strand, within PS417_25070 at 5437.030 kb on - strand, within PS417_25070 at 5437.032 kb on + strand, within PS417_25070 at 5437.032 kb on + strand, within PS417_25070 at 5437.032 kb on + strand, within PS417_25070 at 5437.173 kb on - strand, within PS417_25070 at 5437.250 kb on - strand, within PS417_25070 at 5437.250 kb on - strand, within PS417_25070 at 5437.259 kb on + strand, within PS417_25070 at 5437.300 kb on - strand, within PS417_25070 at 5437.300 kb on - strand, within PS417_25070 at 5437.345 kb on + strand at 5437.346 kb on - strand, within PS417_25070 at 5437.379 kb on + strand at 5437.380 kb on - strand, within PS417_25070 at 5437.401 kb on + strand, within PS417_25070 at 5437.445 kb on - strand, within PS417_25070 at 5437.504 kb on - strand, within PS417_25070 at 5437.504 kb on - strand, within PS417_25070 at 5437.548 kb on + strand, within PS417_25070 at 5437.650 kb on + strand at 5437.656 kb on + strand at 5437.656 kb on + strand at 5437.657 kb on - strand at 5437.739 kb on + strand, within PS417_25075 at 5437.739 kb on + strand at 5437.740 kb on - strand, within PS417_25075 at 5437.741 kb on + strand, within PS417_25075 at 5437.741 kb on + strand, within PS417_25075 at 5437.741 kb on + strand, within PS417_25075 at 5437.741 kb on + strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.754 kb on + strand, within PS417_25075 at 5437.855 kb on + strand, within PS417_25075 at 5437.856 kb on - strand, within PS417_25075 at 5437.856 kb on - strand, within PS417_25075 at 5437.856 kb on - strand, within PS417_25075 at 5438.017 kb on - strand at 5438.221 kb on + strand at 5438.221 kb on + strand at 5438.492 kb on + strand, within PS417_25080 at 5438.492 kb on + strand, within PS417_25080 at 5438.492 kb on + strand, within PS417_25080 at 5438.492 kb on + strand, within PS417_25080 at 5438.493 kb on - strand, within PS417_25080 at 5438.573 kb on - strand, within PS417_25080 at 5438.573 kb on - strand, within PS417_25080
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 5,435,591 - PS417_25065 0.14 +0.8 5,435,599 + PS417_25065 0.14 +0.3 5,435,599 + PS417_25065 0.14 +0.9 5,435,683 - PS417_25065 0.22 -0.8 5,435,683 - PS417_25065 0.22 -0.4 5,435,683 - PS417_25065 0.22 +1.4 5,435,683 - PS417_25065 0.22 -0.2 5,435,702 + PS417_25065 0.23 +1.2 5,435,703 - PS417_25065 0.23 -1.7 5,435,703 - PS417_25065 0.23 +1.3 5,435,755 + PS417_25065 0.28 +0.7 5,435,756 - PS417_25065 0.28 -1.7 5,435,756 - PS417_25065 0.28 -1.6 5,435,756 - PS417_25065 0.28 -0.2 5,435,805 - PS417_25065 0.32 -3.0 5,435,805 - PS417_25065 0.32 +0.3 5,435,836 + PS417_25065 0.35 -3.6 5,435,918 + PS417_25065 0.42 +0.2 5,435,919 - PS417_25065 0.42 +1.4 5,435,919 - PS417_25065 0.42 -0.2 5,436,021 + PS417_25065 0.51 +0.9 5,436,022 - PS417_25065 0.51 +0.2 5,436,034 + PS417_25065 0.52 -1.9 5,436,034 + PS417_25065 0.52 -2.1 5,436,098 + PS417_25065 0.58 -0.7 5,436,130 - PS417_25065 0.60 +0.4 5,436,176 + PS417_25065 0.64 +0.8 5,436,298 + PS417_25065 0.75 +0.8 5,436,298 + PS417_25065 0.75 +0.4 5,436,299 - PS417_25065 0.75 +0.3 5,436,299 - PS417_25065 0.75 -1.2 5,436,372 + PS417_25065 0.81 -0.3 5,436,373 - PS417_25065 0.82 -2.5 5,436,373 - PS417_25065 0.82 -2.5 5,436,374 + PS417_25065 0.82 +1.4 5,436,375 - PS417_25065 0.82 +0.5 5,436,460 - PS417_25065 0.89 -0.8 5,436,460 - PS417_25065 0.89 -1.6 5,436,494 + -0.3 5,436,495 - -0.4 5,436,549 - +1.5 5,436,587 - +0.7 5,436,602 - -2.4 5,436,736 + PS417_25070 0.14 -0.3 5,436,736 + PS417_25070 0.14 -0.1 5,436,737 - PS417_25070 0.14 +1.6 5,436,737 - PS417_25070 0.14 +0.4 5,436,737 - PS417_25070 0.14 +0.8 5,436,749 - PS417_25070 0.15 +1.2 5,436,773 - PS417_25070 0.17 +0.1 5,436,881 - PS417_25070 0.27 -0.1 5,436,881 - PS417_25070 0.27 +1.4 5,436,884 - PS417_25070 0.28 +1.4 5,436,884 - PS417_25070 0.28 -0.5 5,436,924 + PS417_25070 0.31 +2.1 5,436,924 + PS417_25070 0.31 +0.2 5,436,924 + PS417_25070 0.31 +2.0 5,436,924 + PS417_25070 0.31 +0.8 5,436,924 + PS417_25070 0.31 +1.4 5,436,924 + PS417_25070 0.31 +0.5 5,436,925 - PS417_25070 0.31 -3.0 5,436,925 - PS417_25070 0.31 -0.2 5,436,925 - -0.6 5,436,925 - PS417_25070 0.31 +0.1 5,437,001 + PS417_25070 0.38 -3.2 5,437,001 + PS417_25070 0.38 -2.2 5,437,002 - PS417_25070 0.38 +1.2 5,437,002 - PS417_25070 0.38 +1.3 5,437,029 + PS417_25070 0.41 +0.1 5,437,029 + PS417_25070 0.41 +0.4 5,437,029 + PS417_25070 0.41 +1.8 5,437,029 + PS417_25070 0.41 -1.3 5,437,029 + PS417_25070 0.41 -0.3 5,437,030 - PS417_25070 0.41 +2.3 5,437,032 + PS417_25070 0.41 +0.1 5,437,032 + PS417_25070 0.41 +0.6 5,437,032 + PS417_25070 0.41 +2.0 5,437,173 - PS417_25070 0.54 +1.8 5,437,250 - PS417_25070 0.61 -0.9 5,437,250 - PS417_25070 0.61 +1.4 5,437,259 + PS417_25070 0.62 +0.8 5,437,300 - PS417_25070 0.66 +0.4 5,437,300 - PS417_25070 0.66 -1.3 5,437,345 + +1.4 5,437,346 - PS417_25070 0.70 +1.3 5,437,379 + +1.4 5,437,380 - PS417_25070 0.73 +2.1 5,437,401 + PS417_25070 0.75 +0.4 5,437,445 - PS417_25070 0.79 -1.3 5,437,504 - PS417_25070 0.85 +0.2 5,437,504 - PS417_25070 0.85 -2.4 5,437,548 + PS417_25070 0.89 -0.4 5,437,650 + -0.9 5,437,656 + +0.6 5,437,656 + -0.9 5,437,657 - -0.5 5,437,739 + PS417_25075 0.15 -1.2 5,437,739 + +0.7 5,437,740 - PS417_25075 0.15 -1.5 5,437,741 + PS417_25075 0.15 -1.1 5,437,741 + PS417_25075 0.15 -0.9 5,437,741 + PS417_25075 0.15 -0.2 5,437,741 + PS417_25075 0.15 -0.2 5,437,742 - PS417_25075 0.15 +0.2 5,437,742 - PS417_25075 0.15 +0.3 5,437,742 - PS417_25075 0.15 +0.5 5,437,742 - PS417_25075 0.15 +0.1 5,437,742 - PS417_25075 0.15 +0.7 5,437,742 - PS417_25075 0.15 -0.5 5,437,742 - PS417_25075 0.15 -0.9 5,437,754 + PS417_25075 0.17 +0.7 5,437,855 + PS417_25075 0.35 +0.4 5,437,856 - PS417_25075 0.35 -0.4 5,437,856 - PS417_25075 0.35 -0.0 5,437,856 - PS417_25075 0.35 -0.5 5,438,017 - +2.0 5,438,221 + +0.4 5,438,221 + -0.0 5,438,492 + PS417_25080 0.18 -0.1 5,438,492 + PS417_25080 0.18 +0.0 5,438,492 + PS417_25080 0.18 +0.5 5,438,492 + PS417_25080 0.18 +0.7 5,438,493 - PS417_25080 0.18 +1.5 5,438,573 - PS417_25080 0.25 -1.7 5,438,573 - PS417_25080 0.25 -0.1
Or see this region's nucleotide sequence