Strain Fitness in Pseudomonas simiae WCS417 around PS417_24995

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,419,647	-		PS417_24990	0.17	+1.5
5,419,647	-		PS417_24990	0.17	+1.1
5,419,907	+		PS417_24990	0.64	+0.6
5,419,908	-		PS417_24990	0.64	+1.4
5,419,909	+		PS417_24990	0.64	-3.1
5,419,917	+		PS417_24990	0.66	-0.1
5,419,987	+		PS417_24990	0.79	-0.6
5,420,021	+		PS417_24990	0.85	-0.9
5,420,083	-				-1.6
5,420,124	-				+0.7
5,420,124	-				-1.1
5,420,152	-				-0.3
5,420,203	+				-0.3
5,420,206	+				-0.8
5,420,244	+				-0.3
5,420,245	-				+0.0
5,420,298	+				+1.4
5,420,299	-				-1.6
5,420,373	+				-0.2
5,420,388	+				+0.8
5,420,389	-				+0.3
5,420,391	+				+0.7
5,420,391	+				+0.2
5,420,391	+				-0.6
5,420,391	+				+1.2
5,420,392	-				-0.2
5,420,393	+				+0.4
5,420,411	+				+0.7
5,420,485	-				-0.6
5,420,524	-				+0.2
5,420,553	+				+0.0
5,420,554	-				-1.5
5,420,554	-				+0.4
5,420,559	+				-1.3
5,420,566	+				+1.1
5,420,584	+				-1.2
5,420,608	-				+0.8
5,420,609	+				-0.4
5,420,610	-				-0.7
5,420,628	-				-0.3
5,420,712	+		PS417_24995	0.19	+0.6
5,420,713	-		PS417_24995	0.19	+0.1
5,420,808	+		PS417_24995	0.37	+3.1
5,420,866	+		PS417_24995	0.49	+0.5
5,420,866	+		PS417_24995	0.49	+1.3
5,420,867	-		PS417_24995	0.49	+1.1
5,420,867	-		PS417_24995	0.49	-1.6
5,421,004	+		PS417_24995	0.75	+1.5
5,421,007	+		PS417_24995	0.76	+0.7
5,421,008	-		PS417_24995	0.76	-0.1
5,421,008	-		PS417_24995	0.76	+1.4
5,421,086	-				-1.8
5,421,130	+				+0.6
5,421,130	+				+0.6
5,421,130	+				+0.2
5,421,131	-				-1.4
5,421,131	-				+0.7
5,421,131	-				+0.7
5,421,148	-				-0.6
5,421,150	+				+1.1
5,421,205	+		PS417_25000	0.14	+0.4
5,421,205	+		PS417_25000	0.14	-1.1
5,421,205	+		PS417_25000	0.14	+4.2
5,421,205	+		PS417_25000	0.14	-0.2
5,421,206	-		PS417_25000	0.14	+0.5
5,421,206	-		PS417_25000	0.14	+0.8
5,421,206	-		PS417_25000	0.14	+1.4
5,421,206	-		PS417_25000	0.14	-1.9
5,421,206	-		PS417_25000	0.14	+0.2
5,421,240	+		PS417_25000	0.20	-0.3
5,421,282	+		PS417_25000	0.27	-1.0
5,421,282	+		PS417_25000	0.27	+0.6
5,421,388	+		PS417_25000	0.46	-0.6
5,421,522	+		PS417_25000	0.69	-0.2
5,421,528	+		PS417_25000	0.70	-0.1
5,421,596	+		PS417_25000	0.82	-0.4
5,421,663	+				-0.8
5,421,664	-				+1.2
5,421,667	-				-0.4
5,421,667	-				+1.0
5,421,667	-				-0.6
5,421,675	+				+0.3
5,421,724	+				+0.6
5,421,764	+				-2.0
5,421,817	+		PS417_25005	0.12	-0.5
5,421,817	+		PS417_25005	0.12	+0.3
5,421,818	-		PS417_25005	0.12	+0.4
5,421,818	-		PS417_25005	0.12	-0.4
5,421,826	+		PS417_25005	0.14	-1.6
5,421,826	+		PS417_25005	0.14	-1.2
5,421,827	-		PS417_25005	0.14	+1.5
5,421,867	+		PS417_25005	0.19	+0.6
5,421,867	+		PS417_25005	0.19	-1.9
5,421,868	-		PS417_25005	0.19	-0.9
5,421,868	-		PS417_25005	0.19	+0.2
5,421,868	-		PS417_25005	0.19	+0.3
5,421,868	-		PS417_25005	0.19	+0.0
5,421,878	+				-1.6
5,421,885	+		PS417_25005	0.21	+1.4
5,421,886	-		PS417_25005	0.21	+0.1
5,421,927	-		PS417_25005	0.27	-0.3
5,421,955	+		PS417_25005	0.30	-2.0
5,421,956	-		PS417_25005	0.31	-0.6
5,421,956	-		PS417_25005	0.31	-0.0
5,421,956	-		PS417_25005	0.31	-0.7
5,421,958	+		PS417_25005	0.31	-0.5
5,421,959	-		PS417_25005	0.31	-1.0
5,421,971	+		PS417_25005	0.33	-2.2
5,422,056	-		PS417_25005	0.44	+0.2
5,422,056	-		PS417_25005	0.44	+0.3