Strain Fitness in Pseudomonas simiae WCS417 around PS417_24960

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,411,105	-				+1.0
5,411,108	+				-0.9
5,411,108	+				-0.4
5,411,108	+				-0.1
5,411,108	+				-0.3
5,411,108	+				-1.2
5,411,108	+				+0.0
5,411,108	+				-0.2
5,411,108	+				-0.6
5,411,109	-				+1.3
5,411,109	-				+0.2
5,411,125	+				-0.2
5,411,179	+				+2.7
5,411,218	+				+0.2
5,411,219	-				-3.8
5,411,219	-				+1.8
5,411,238	+				+0.2
5,411,238	+				+2.0
5,411,238	+				-0.3
5,411,239	-				-0.8
5,411,239	-				-1.1
5,411,239	-				+1.2
5,411,239	-				-0.9
5,411,239	-				-0.0
5,411,239	-				+0.3
5,411,239	-				+1.4
5,411,239	-				+3.7
5,411,368	+				-3.2
5,411,378	+				-2.6
5,411,378	+				+0.1
5,411,379	-				-0.0
5,411,379	-				+0.5
5,411,408	+				-1.0
5,411,423	+				+0.3
5,411,445	-				+0.7
5,411,445	-				-0.9
5,411,480	+				-0.6
5,411,480	+				-0.7
5,411,535	-				+1.7
5,411,575	+				+1.9
5,411,575	+				-3.2
5,411,576	-				-0.8
5,411,576	-				+1.4
5,411,577	+				-0.4
5,411,577	+				-1.7
5,411,578	-				-0.7
5,411,578	-				+1.4
5,411,578	-				+0.1
5,411,578	-				-1.9
5,411,578	-				-1.2
5,411,633	+				-0.5
5,411,633	+				+0.1
5,411,634	-				-0.2
5,411,663	+				-2.4
5,411,663	+				-1.9
5,411,664	-				-0.9
5,411,683	+				+1.3
5,411,684	-				-0.6
5,411,725	+				+2.4
5,411,726	-				-2.4
5,411,726	-				+0.0
5,411,739	+				-0.6
5,411,740	-				-0.1
5,411,763	+				-0.3
5,411,764	-				-2.1
5,411,764	-				+0.9
5,411,797	+		PS417_24955	0.17	-0.4
5,411,797	+		PS417_24955	0.17	+0.9
5,411,798	-		PS417_24955	0.18	+0.2
5,411,802	+		PS417_24955	0.19	+1.1
5,411,802	+		PS417_24955	0.19	-0.1
5,411,803	-		PS417_24955	0.20	-1.4
5,411,803	-		PS417_24955	0.20	-0.3
5,411,803	-		PS417_24955	0.20	+0.2
5,411,803	-		PS417_24955	0.20	-2.7
5,411,803	-		PS417_24955	0.20	+3.9
5,411,803	-				+1.4
5,411,803	-		PS417_24955	0.20	-3.0
5,411,855	+		PS417_24955	0.42	-2.3
5,411,855	+		PS417_24955	0.42	-2.2
5,411,855	+		PS417_24955	0.42	+0.6
5,411,856	-		PS417_24955	0.42	-2.7
5,411,860	+		PS417_24955	0.44	-0.2
5,411,860	+		PS417_24955	0.44	+1.9
5,411,860	+		PS417_24955	0.44	-1.4
5,411,860	+				+2.4
5,411,860	+		PS417_24955	0.44	+0.8
5,411,860	+		PS417_24955	0.44	-0.9
5,411,861	-		PS417_24955	0.44	+0.4
5,411,861	-		PS417_24955	0.44	+0.8
5,411,861	-		PS417_24955	0.44	-1.4
5,411,861	-		PS417_24955	0.44	+1.4
5,411,991	-				+0.4
5,412,073	+				-0.5
5,412,073	+				+0.1
5,412,074	-				-0.8
5,412,091	+				+0.3
5,412,106	+				+0.4
5,412,107	-				-0.3
5,412,117	+				+0.4
5,412,118	-				-0.3
5,412,186	+				+0.8
5,412,186	+				+0.6
5,412,187	-				+1.5
5,412,187	-				+1.0
5,412,199	+				+0.1
5,412,199	+				-1.7
5,412,200	-				-0.0
5,412,200	-				+0.9
5,412,205	+				-0.4
5,412,217	-				-0.7
5,412,325	-		PS417_24960	0.14	-0.7
5,412,473	+		PS417_24960	0.23	-0.7
5,412,558	+		PS417_24960	0.29	+1.2
5,412,566	-		PS417_24960	0.29	-0.2
5,412,580	+		PS417_24960	0.30	+0.0
5,412,580	+		PS417_24960	0.30	-0.7
5,412,581	-		PS417_24960	0.30	+2.0
5,412,695	+		PS417_24960	0.37	-0.5
5,412,695	+		PS417_24960	0.37	+0.8
5,412,696	-		PS417_24960	0.37	-1.3
5,412,696	-		PS417_24960	0.37	-0.1
5,412,696	-		PS417_24960	0.37	+2.0
5,412,696	-		PS417_24960	0.37	-1.5
5,412,697	+		PS417_24960	0.38	-0.7
5,412,698	-		PS417_24960	0.38	-1.8
5,412,698	-		PS417_24960	0.38	-0.8
5,412,717	+		PS417_24960	0.39	-0.3
5,412,718	-		PS417_24960	0.39	+0.1
5,412,788	-		PS417_24960	0.43	-0.2
5,412,788	-		PS417_24960	0.43	+1.0
5,412,788	-		PS417_24960	0.43	-1.1
5,412,788	-		PS417_24960	0.43	-2.0
5,412,838	+		PS417_24960	0.46	-0.2
5,412,838	+		PS417_24960	0.46	+0.3
5,412,900	+		PS417_24960	0.50	-0.2
5,412,901	-		PS417_24960	0.50	-1.2
5,412,901	-		PS417_24960	0.50	-1.2
5,412,918	+		PS417_24960	0.52	-1.1
5,413,060	+		PS417_24960	0.61	+0.6
5,413,061	-		PS417_24960	0.61	+0.5
5,413,061	-		PS417_24960	0.61	-2.7
5,413,103	+		PS417_24960	0.63	-0.2
5,413,104	-		PS417_24960	0.63	+0.2
5,413,181	+		PS417_24960	0.68	-0.4
5,413,213	+		PS417_24960	0.70	+1.4
5,413,337	+		PS417_24960	0.78	+0.4
5,413,338	-		PS417_24960	0.78	+1.0
5,413,550	+				+1.5
5,413,654	-				+0.4
5,413,654	-				+0.2
5,413,736	+				-0.2
5,413,981	+				-0.6
5,413,981	+		PS417_24965	0.65	+1.2
5,413,981	+				+1.4
5,413,982	-				+0.4
5,413,982	-		PS417_24965	0.65	+1.4
5,413,982	-		PS417_24965	0.65	-0.2
5,414,157	-				-1.9
5,414,178	+				-1.3
5,414,178	+				-0.5
5,414,184	-				+0.2
5,414,213	+				+0.4
5,414,213	+				-0.8
5,414,237	+				-2.2
5,414,237	+				-0.4
5,414,237	+				-0.5
5,414,237	+				-0.9
5,414,400	+				-0.1
5,414,400	+				-1.8
5,414,401	-				+0.1
5,414,401	-				-0.1
5,414,455	-				+0.8
5,414,494	+				-0.0
5,414,526	+				-0.2
5,414,584	+				-0.6
5,414,584	+				-1.6
5,414,585	-				+0.4
5,414,585	-				-1.8
5,414,612	+				+0.4
5,414,612	+				+0.6
5,414,613	-				+1.4
5,414,613	-				-0.6