Strain Fitness in Pseudomonas simiae WCS417 around PS417_02475

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02465 and PS417_02470 overlap by 13 nucleotidesPS417_02470 and PS417_02475 are separated by 15 nucleotidesPS417_02475 and PS417_02480 overlap by 1 nucleotides PS417_02465: PS417_02465 - carbohydrate kinase, at 563,744 to 564,604 _02465 PS417_02470: PS417_02470 - ATPase, at 564,592 to 565,062 _02470 PS417_02475: PS417_02475 - N-acetylmuramoyl-L-alanine amidase, at 565,078 to 566,499 _02475 PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415 _02480 Position (kb) 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 564.275 kb on - strand, within PS417_02465at 564.465 kb on - strand, within PS417_02465at 564.555 kb on + strandat 564.602 kb on + strandat 566.296 kb on + strand, within PS417_02475at 566.296 kb on + strand, within PS417_02475at 566.296 kb on + strandat 566.297 kb on - strand, within PS417_02475at 566.297 kb on - strand, within PS417_02475at 566.297 kb on - strand, within PS417_02475at 566.297 kb on - strand, within PS417_02475at 566.409 kb on + strandat 567.285 kb on + strand, within PS417_02480at 567.285 kb on + strand, within PS417_02480

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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564,275 - PS417_02465 0.62 +0.4
564,465 - PS417_02465 0.84 +0.6
564,555 + +0.7
564,602 + -1.5
566,296 + PS417_02475 0.86 -0.1
566,296 + PS417_02475 0.86 -0.7
566,296 + +0.5
566,297 - PS417_02475 0.86 -1.4
566,297 - PS417_02475 0.86 +2.5
566,297 - PS417_02475 0.86 -0.5
566,297 - PS417_02475 0.86 -3.5
566,409 + -1.1
567,285 + PS417_02480 0.41 -0.1
567,285 + PS417_02480 0.41 +0.8

Or see this region's nucleotide sequence