Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24565 and PS417_24570 are separated by 398 nucleotides PS417_24570 and PS417_24575 are separated by 202 nucleotides PS417_24575 and PS417_24580 overlap by 6 nucleotides
PS417_24565: PS417_24565 - hypothetical protein, at 5,330,150 to 5,331,196
_24565
PS417_24570: PS417_24570 - AsnC family transcriptional regulator, at 5,331,595 to 5,332,074
_24570
PS417_24575: PS417_24575 - hypothetical protein, at 5,332,277 to 5,332,486
_24575
PS417_24580: PS417_24580 - pseudouridine synthase, at 5,332,481 to 5,333,116
_24580
Position (kb) 5331
5332
5333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5330.595 kb on + strand, within PS417_24565 at 5330.596 kb on - strand, within PS417_24565 at 5330.596 kb on - strand, within PS417_24565 at 5330.799 kb on + strand, within PS417_24565 at 5330.800 kb on - strand, within PS417_24565 at 5330.902 kb on + strand, within PS417_24565 at 5330.903 kb on - strand, within PS417_24565 at 5331.167 kb on + strand at 5331.167 kb on + strand at 5331.200 kb on - strand at 5331.475 kb on + strand at 5331.481 kb on + strand at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.800 kb on - strand, within PS417_24570 at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.143 kb on + strand at 5332.143 kb on + strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.235 kb on + strand at 5332.237 kb on + strand at 5332.349 kb on - strand, within PS417_24575 at 5332.483 kb on - strand at 5332.483 kb on - strand at 5332.484 kb on + strand at 5332.485 kb on - strand at 5332.485 kb on - strand at 5332.485 kb on - strand at 5332.601 kb on + strand, within PS417_24580 at 5332.613 kb on - strand, within PS417_24580 at 5332.644 kb on + strand, within PS417_24580 at 5332.653 kb on - strand, within PS417_24580 at 5333.002 kb on + strand, within PS417_24580
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 5,330,595 + PS417_24565 0.43 -1.9 5,330,596 - PS417_24565 0.43 -0.7 5,330,596 - PS417_24565 0.43 -1.2 5,330,799 + PS417_24565 0.62 +0.3 5,330,800 - PS417_24565 0.62 -0.3 5,330,902 + PS417_24565 0.72 -1.6 5,330,903 - PS417_24565 0.72 -0.0 5,331,167 + +1.6 5,331,167 + -1.8 5,331,200 - -2.1 5,331,475 + -0.6 5,331,481 + -1.1 5,331,739 + PS417_24570 0.30 -2.8 5,331,739 + PS417_24570 0.30 -1.6 5,331,739 + PS417_24570 0.30 +3.0 5,331,739 + PS417_24570 0.30 -0.7 5,331,740 - PS417_24570 0.30 -2.1 5,331,740 - PS417_24570 0.30 -2.3 5,331,800 - PS417_24570 0.43 -2.2 5,332,089 + +0.1 5,332,089 + +0.2 5,332,089 + +1.3 5,332,090 - -0.9 5,332,090 - -0.2 5,332,090 - +1.7 5,332,143 + -0.7 5,332,143 + -0.4 5,332,144 - -2.2 5,332,144 - +0.5 5,332,144 - -2.8 5,332,144 - -1.0 5,332,235 + -1.2 5,332,237 + +1.0 5,332,349 - PS417_24575 0.34 -0.2 5,332,483 - -0.2 5,332,483 - +0.5 5,332,484 + -0.1 5,332,485 - -1.5 5,332,485 - -0.2 5,332,485 - -2.5 5,332,601 + PS417_24580 0.19 -3.1 5,332,613 - PS417_24580 0.21 -2.1 5,332,644 + PS417_24580 0.26 -0.3 5,332,653 - PS417_24580 0.27 -0.1 5,333,002 + PS417_24580 0.82 +0.8
Or see this region's nucleotide sequence