Strain Fitness in Pseudomonas simiae WCS417 around PS417_23775

Experiment: JP1 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_23770 and PS417_23775 overlap by 4 nucleotidesPS417_23775 and PS417_23780 overlap by 4 nucleotides PS417_23770: PS417_23770 - exodeoxyribonuclease V subunit alpha, at 5,138,063 to 5,140,132 _23770 PS417_23775: PS417_23775 - exodeoxyribonuclease V subunit beta, at 5,140,129 to 5,143,803 _23775 PS417_23780: PS417_23780 - exodeoxyribonuclease V subunit gamma, at 5,143,800 to 5,147,252 _23780 Position (kb) 5140 5141 5142 5143 5144Strain fitness (log2 ratio) -1 0 1 2 3at 5139.694 kb on - strand, within PS417_23770at 5140.064 kb on + strandat 5140.064 kb on + strandat 5140.132 kb on + strandat 5140.132 kb on + strandat 5140.133 kb on - strandat 5140.996 kb on - strand, within PS417_23775at 5142.128 kb on - strand, within PS417_23775at 5142.338 kb on - strand, within PS417_23775at 5142.489 kb on - strand, within PS417_23775at 5144.594 kb on - strand, within PS417_23780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
remove
5,139,694 - PS417_23770 0.79 +0.4
5,140,064 + +2.6
5,140,064 + +0.2
5,140,132 + +0.2
5,140,132 + +0.4
5,140,133 - -1.5
5,140,996 - PS417_23775 0.24 +3.4
5,142,128 - PS417_23775 0.54 +3.3
5,142,338 - PS417_23775 0.60 -0.2
5,142,489 - PS417_23775 0.64 +1.4
5,144,594 - PS417_23780 0.23 +1.1

Or see this region's nucleotide sequence