Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23535 and PS417_23540 are separated by 101 nucleotides PS417_23540 and PS417_23545 are separated by 15 nucleotides PS417_23545 and PS417_23550 are separated by 109 nucleotides
PS417_23535: PS417_23535 - glutathione peroxidase, at 5,092,191 to 5,092,673
_23535
PS417_23540: PS417_23540 - CreA, at 5,092,775 to 5,093,239
_23540
PS417_23545: PS417_23545 - gamma-glutamyl kinase, at 5,093,255 to 5,094,373
_23545
PS417_23550: PS417_23550 - GTPase CgtA, at 5,094,483 to 5,095,706
_23550
Position (kb) 5093
5094
5095 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5092.519 kb on + strand, within PS417_23535 at 5092.519 kb on + strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand at 5092.520 kb on - strand, within PS417_23535 at 5092.550 kb on - strand, within PS417_23535 at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.745 kb on + strand at 5092.746 kb on - strand at 5092.854 kb on + strand, within PS417_23540 at 5092.854 kb on + strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5093.076 kb on + strand, within PS417_23540 at 5093.076 kb on + strand, within PS417_23540 at 5093.077 kb on - strand, within PS417_23540 at 5093.245 kb on - strand at 5093.245 kb on - strand at 5093.304 kb on + strand at 5093.305 kb on - strand at 5093.305 kb on - strand at 5093.371 kb on - strand, within PS417_23545 at 5093.371 kb on - strand, within PS417_23545 at 5093.418 kb on - strand, within PS417_23545 at 5093.418 kb on - strand, within PS417_23545 at 5094.335 kb on + strand at 5094.386 kb on + strand at 5094.387 kb on - strand at 5094.387 kb on - strand at 5094.387 kb on - strand at 5094.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 5,092,519 + PS417_23535 0.68 +1.4 5,092,519 + PS417_23535 0.68 -0.6 5,092,520 - PS417_23535 0.68 -1.0 5,092,520 - PS417_23535 0.68 -0.5 5,092,520 - -0.2 5,092,520 - PS417_23535 0.68 -0.4 5,092,550 - PS417_23535 0.74 -0.0 5,092,722 + -2.6 5,092,722 + +0.1 5,092,722 + -1.7 5,092,745 + +2.4 5,092,746 - -0.6 5,092,854 + PS417_23540 0.17 -0.6 5,092,854 + PS417_23540 0.17 -2.4 5,092,855 - PS417_23540 0.17 -0.3 5,092,855 - PS417_23540 0.17 +0.0 5,092,857 - PS417_23540 0.18 -0.6 5,092,857 - PS417_23540 0.18 +0.4 5,093,076 + PS417_23540 0.65 +2.1 5,093,076 + PS417_23540 0.65 +1.4 5,093,077 - PS417_23540 0.65 -0.3 5,093,245 - +0.1 5,093,245 - +0.2 5,093,304 + -1.8 5,093,305 - +2.1 5,093,305 - +2.0 5,093,371 - PS417_23545 0.10 +0.4 5,093,371 - PS417_23545 0.10 -2.3 5,093,418 - PS417_23545 0.15 -1.4 5,093,418 - PS417_23545 0.15 -0.2 5,094,335 + -1.0 5,094,386 + +1.1 5,094,387 - +0.5 5,094,387 - +0.2 5,094,387 - +0.8 5,094,496 + -2.0
Or see this region's nucleotide sequence