Strain Fitness in Pseudomonas simiae WCS417 around PS417_21925

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21920 and PS417_21925 are separated by 106 nucleotidesPS417_21925 and PS417_21930 are separated by 81 nucleotidesPS417_21930 and PS417_21935 are separated by 88 nucleotides PS417_21915: PS417_21915 - LysR family transcriptional regulator, at 4,756,107 to 4,757,024 _21915 PS417_21920: PS417_21920 - transcriptional regulator, at 4,757,021 to 4,757,917 _21920 PS417_21925: PS417_21925 - short-chain dehydrogenase, at 4,758,024 to 4,758,782 _21925 PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328 _21930 PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271 _21935 Position (kb) 4758 4759Strain fitness (log2 ratio) -2 -1 0 1 2at 4757.145 kb on - strand, within PS417_21920at 4757.180 kb on + strandat 4757.339 kb on + strand, within PS417_21920at 4757.340 kb on - strand, within PS417_21920at 4757.340 kb on - strand, within PS417_21920at 4757.343 kb on + strand, within PS417_21920at 4757.343 kb on + strand, within PS417_21920at 4757.343 kb on + strand, within PS417_21920at 4757.343 kb on + strand, within PS417_21920at 4757.344 kb on - strand, within PS417_21920at 4757.344 kb on - strand, within PS417_21920at 4757.344 kb on - strand, within PS417_21920at 4757.395 kb on - strand, within PS417_21920at 4757.437 kb on + strand, within PS417_21920at 4757.620 kb on + strand, within PS417_21920at 4757.721 kb on + strand, within PS417_21920at 4757.721 kb on + strand, within PS417_21920at 4757.721 kb on + strand, within PS417_21920at 4757.721 kb on + strand, within PS417_21920at 4757.825 kb on - strand, within PS417_21920at 4757.982 kb on + strandat 4758.044 kb on + strandat 4758.044 kb on + strandat 4758.045 kb on - strandat 4758.124 kb on - strand, within PS417_21925at 4758.268 kb on + strand, within PS417_21925at 4758.268 kb on + strand, within PS417_21925at 4758.269 kb on - strand, within PS417_21925at 4758.446 kb on + strand, within PS417_21925at 4758.447 kb on - strand, within PS417_21925at 4758.447 kb on - strand, within PS417_21925at 4758.493 kb on - strand, within PS417_21925at 4758.894 kb on - strandat 4758.940 kb on + strand, within PS417_21930at 4758.952 kb on + strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.964 kb on + strand, within PS417_21930at 4759.001 kb on + strand, within PS417_21930at 4759.391 kb on - strandat 4759.554 kb on - strand, within PS417_21935at 4759.721 kb on - strand, within PS417_21935at 4759.721 kb on - strand, within PS417_21935

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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4,757,145 - PS417_21920 0.14 -0.5
4,757,180 + +0.3
4,757,339 + PS417_21920 0.35 +0.1
4,757,340 - PS417_21920 0.36 -1.6
4,757,340 - PS417_21920 0.36 -0.9
4,757,343 + PS417_21920 0.36 -0.2
4,757,343 + PS417_21920 0.36 -0.5
4,757,343 + PS417_21920 0.36 -0.9
4,757,343 + PS417_21920 0.36 -1.0
4,757,344 - PS417_21920 0.36 +0.7
4,757,344 - PS417_21920 0.36 -1.5
4,757,344 - PS417_21920 0.36 +0.0
4,757,395 - PS417_21920 0.42 +2.1
4,757,437 + PS417_21920 0.46 -0.5
4,757,620 + PS417_21920 0.67 -0.4
4,757,721 + PS417_21920 0.78 -1.0
4,757,721 + PS417_21920 0.78 +0.7
4,757,721 + PS417_21920 0.78 +0.8
4,757,721 + PS417_21920 0.78 -1.0
4,757,825 - PS417_21920 0.90 -0.0
4,757,982 + -1.3
4,758,044 + -1.1
4,758,044 + -1.8
4,758,045 - -2.5
4,758,124 - PS417_21925 0.13 +0.2
4,758,268 + PS417_21925 0.32 -0.4
4,758,268 + PS417_21925 0.32 +0.3
4,758,269 - PS417_21925 0.32 +0.9
4,758,446 + PS417_21925 0.56 -0.8
4,758,447 - PS417_21925 0.56 +1.2
4,758,447 - PS417_21925 0.56 +0.0
4,758,493 - PS417_21925 0.62 +0.5
4,758,894 - +0.7
4,758,940 + PS417_21930 0.16 -1.8
4,758,952 + PS417_21930 0.19 +0.3
4,758,953 - PS417_21930 0.19 +0.3
4,758,953 - PS417_21930 0.19 +1.8
4,758,953 - PS417_21930 0.19 -0.0
4,758,958 + PS417_21930 0.20 +0.5
4,758,958 + PS417_21930 0.20 +1.9
4,758,958 + PS417_21930 0.20 +2.7
4,758,958 + PS417_21930 0.20 -1.3
4,758,958 + PS417_21930 0.20 +0.2
4,758,958 + PS417_21930 0.20 -1.5
4,758,958 + PS417_21930 0.20 -2.1
4,758,958 + PS417_21930 0.20 -1.4
4,758,958 + PS417_21930 0.20 +0.3
4,758,958 + PS417_21930 0.20 -0.7
4,758,959 - PS417_21930 0.20 +0.2
4,758,959 - PS417_21930 0.20 -2.1
4,758,959 - PS417_21930 0.20 +2.6
4,758,959 - PS417_21930 0.20 -1.4
4,758,959 - PS417_21930 0.20 +0.8
4,758,959 - PS417_21930 0.20 +0.0
4,758,964 + PS417_21930 0.22 +0.6
4,759,001 + PS417_21930 0.29 -0.7
4,759,391 - -0.6
4,759,554 - PS417_21935 0.16 +2.3
4,759,721 - PS417_21935 0.36 +0.5
4,759,721 - PS417_21935 0.36 -0.7

Or see this region's nucleotide sequence