Strain Fitness in Pseudomonas simiae WCS417 around PS417_21905

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,753,922	+		PS417_21900	0.60	+0.9
4,753,922	+		PS417_21900	0.60	-0.0
4,753,923	-		PS417_21900	0.60	-0.5
4,753,980	-		PS417_21900	0.66	-1.5
4,753,980	-		PS417_21900	0.66	+0.1
4,754,210	+		PS417_21900	0.89	+0.1
4,754,249	+				-0.4
4,754,249	+				+2.1
4,754,250	-				+0.5
4,754,250	-				-1.7
4,754,253	-				+0.3
4,754,593	+		PS417_21905	0.32	+1.5
4,754,659	+		PS417_21905	0.40	+0.2
4,754,812	+		PS417_21905	0.57	+2.2
4,754,891	-		PS417_21905	0.66	-0.7
4,754,891	-		PS417_21905	0.66	-1.0
4,755,036	+		PS417_21905	0.83	+1.8
4,755,036	+		PS417_21905	0.83	+0.3
4,755,036	+		PS417_21905	0.83	-0.2
4,755,037	-				-0.5
4,755,037	-				+2.3
4,755,037	-		PS417_21905	0.83	-0.7
4,755,037	-		PS417_21905	0.83	-0.7
4,755,212	+				-0.5
4,755,212	+				-0.8
4,755,212	+				-1.9
4,755,212	+				-2.0
4,755,213	-				+0.3
4,755,213	-				-2.1
4,755,247	-				-1.0
4,755,247	-				-1.0
4,755,247	-				-1.8
4,755,378	-		PS417_21910	0.18	-0.8
4,755,450	-		PS417_21910	0.27	-0.3
4,755,487	-		PS417_21910	0.32	-2.5
4,755,502	-		PS417_21910	0.34	+0.0
4,755,570	+		PS417_21910	0.43	-0.4
4,755,570	+		PS417_21910	0.43	-0.7
4,755,571	-		PS417_21910	0.43	+0.0
4,755,571	-		PS417_21910	0.43	+1.3
4,755,571	-		PS417_21910	0.43	-0.3
4,755,571	-		PS417_21910	0.43	+0.4
4,755,652	-		PS417_21910	0.54	-0.4
4,755,688	+		PS417_21910	0.58	-1.3
4,755,688	+		PS417_21910	0.58	-0.8
4,755,729	+		PS417_21910	0.64	-0.8
4,755,730	-		PS417_21910	0.64	+1.3
4,755,913	+		PS417_21910	0.88	+0.1
4,755,913	+		PS417_21910	0.88	-0.8
4,755,913	+		PS417_21910	0.88	-0.1
4,755,914	-		PS417_21910	0.88	+0.2
4,755,915	+		PS417_21910	0.88	+0.3
4,755,915	+		PS417_21910	0.88	+0.2
4,755,915	+		PS417_21910	0.88	-0.5
4,755,916	-		PS417_21910	0.88	-2.0
4,755,916	-		PS417_21910	0.88	+0.3
4,755,916	-		PS417_21910	0.88	+1.3
4,755,916	-		PS417_21910	0.88	-1.5
4,756,019	+				+0.2
4,756,020	-				-3.3
4,756,101	-				+1.3
4,756,134	+				+1.2