Strain Fitness in Pseudomonas simiae WCS417 around PS417_21400

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,647,065	+		PS417_21395	0.14	-0.3
4,647,065	+		PS417_21395	0.14	-0.4
4,647,066	-		PS417_21395	0.14	-0.6
4,647,066	-		PS417_21395	0.14	-0.4
4,647,135	+		PS417_21395	0.21	-2.4
4,647,177	-		PS417_21395	0.26	+0.4
4,647,190	+		PS417_21395	0.27	-0.2
4,647,239	+		PS417_21395	0.32	-0.4
4,647,239	+		PS417_21395	0.32	-0.5
4,647,239	+		PS417_21395	0.32	-1.5
4,647,240	-		PS417_21395	0.32	-1.2
4,647,377	+		PS417_21395	0.46	-0.2
4,647,378	-		PS417_21395	0.46	-0.2
4,647,740	+		PS417_21395	0.84	+2.6
4,647,740	+		PS417_21395	0.84	-0.7
4,647,818	+				+0.0
4,647,818	+				-0.0
4,647,822	+				-0.1
4,647,822	+				-0.2
4,647,822	+				-1.2
4,647,830	+				-1.1
4,647,831	-				+1.3
4,647,831	-				-0.2
4,647,958	-				-2.4
4,647,980	+				-0.1
4,647,994	+				-0.1
4,647,995	-				-0.2
4,648,015	-				+0.3
4,648,149	+		PS417_21400	0.21	-4.4
4,648,150	-		PS417_21400	0.21	-0.2
4,648,200	+		PS417_21400	0.29	+0.3
4,648,393	-		PS417_21400	0.58	-0.0
4,648,464	+		PS417_21400	0.69	-1.8
4,648,485	+		PS417_21400	0.72	-1.7
4,648,486	-		PS417_21400	0.72	-0.9
4,648,486	-		PS417_21400	0.72	-2.4
4,648,504	+		PS417_21400	0.75	-0.2
4,648,515	+		PS417_21400	0.77	-4.2
4,648,515	+		PS417_21400	0.77	-1.5
4,648,516	-		PS417_21400	0.77	-0.4
4,648,516	-		PS417_21400	0.77	+0.3
4,648,784	+				-1.6
4,648,784	+				+0.6
4,648,784	+				-1.2
4,648,785	-				-3.4
4,648,848	+				-0.9
4,648,966	+				-0.2
4,648,966	+				-0.5
4,648,966	+				-0.2
4,648,967	-				+0.2
4,649,042	+				-0.8
4,649,042	+				-0.2
4,649,049	-				-0.9
4,649,049	-				-1.0
4,649,058	-				+0.6
4,649,210	-		PS417_21405	0.12	+1.6
4,649,218	-		PS417_21405	0.13	-0.1
4,649,230	+		PS417_21405	0.15	-1.7
4,649,231	-		PS417_21405	0.15	+0.5
4,649,380	+		PS417_21405	0.34	-0.2
4,649,381	-		PS417_21405	0.34	-1.5
4,649,381	-		PS417_21405	0.34	-0.5
4,649,594	-		PS417_21405	0.61	-0.9