Strain Fitness in Pseudomonas simiae WCS417 around PS417_20585

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,472,519	-		PS417_20580	0.82	-0.3
4,472,642	+		PS417_20580	0.89	-1.3
4,472,669	-				+0.7
4,472,937	+				+1.3
4,473,002	-				+0.3
4,473,097	+				+1.5
4,473,097	+				+2.0
4,473,097	+				+1.0
4,473,114	-				-2.5
4,473,138	-				-0.7
4,473,140	-				-1.0
4,473,159	+				+2.2
4,473,160	-				+0.9
4,473,194	+				+2.6
4,473,194	+				+2.2
4,473,194	+				+2.6
4,473,194	+				+2.2
4,473,195	-				-3.3
4,473,293	-				-2.3
4,473,293	-				-3.8
4,473,576	-		PS417_20585	0.22	-2.4
4,473,588	+		PS417_20585	0.23	-3.2
4,473,589	-		PS417_20585	0.23	-3.4
4,473,623	-		PS417_20585	0.25	-5.3
4,473,716	+		PS417_20585	0.31	-3.9
4,473,716	+				-1.0
4,473,716	+		PS417_20585	0.31	-1.3
4,473,717	-		PS417_20585	0.31	-0.3
4,473,768	+		PS417_20585	0.34	-1.0
4,473,768	+		PS417_20585	0.34	-4.7
4,473,769	-		PS417_20585	0.34	-1.3
4,474,860	-				-0.6
4,474,875	-				-3.6
4,474,883	-				-3.0
4,474,883	-				-1.7
4,474,883	-				-2.7
4,474,915	+				-2.9
4,474,915	+				+1.0
4,474,916	-				-1.7
4,474,916	-				-1.0
4,474,959	+				-0.5
4,474,960	-				-2.1
4,475,137	+		PS417_20590	0.27	+0.2
4,475,137	+		PS417_20590	0.27	-0.7
4,475,137	+		PS417_20590	0.27	-1.7
4,475,138	-		PS417_20590	0.27	+1.6
4,475,267	+		PS417_20590	0.42	+0.5
4,475,267	+		PS417_20590	0.42	+0.1
4,475,267	+		PS417_20590	0.42	+0.0
4,475,267	+		PS417_20590	0.42	-3.1
4,475,268	-		PS417_20590	0.42	-3.1
4,475,268	-		PS417_20590	0.42	-2.9
4,475,494	+		PS417_20590	0.67	-0.9
4,475,495	-		PS417_20590	0.67	+1.5
4,475,575	-		PS417_20590	0.76	-0.8
4,475,587	+		PS417_20590	0.77	+0.3
4,475,587	+		PS417_20590	0.77	+0.5
4,475,588	-		PS417_20590	0.77	-0.6
4,475,596	+		PS417_20590	0.78	+0.3
4,475,629	-		PS417_20590	0.82	-0.5
4,475,649	+		PS417_20590	0.84	-0.5
4,475,719	+				+2.5
4,475,720	-				+0.3
4,475,720	-				-2.1
4,475,720	-				-1.0