Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02025 and PS417_02030 are separated by 26 nucleotides PS417_02030 and PS417_02035 overlap by 1 nucleotides PS417_02035 and PS417_02040 overlap by 4 nucleotides
PS417_02025: PS417_02025 - hypothetical protein, at 455,921 to 456,373
_02025
PS417_02030: PS417_02030 - 3-oxoacyl-ACP synthase, at 456,400 to 457,626
_02030
PS417_02035: PS417_02035 - 3-ketoacyl-ACP reductase, at 457,626 to 458,354
_02035
PS417_02040: PS417_02040 - 3-hydroxylacyl-ACP dehydratase, at 458,351 to 458,812
_02040
Position (kb) 456
457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 455.868 kb on + strand at 456.045 kb on + strand, within PS417_02025 at 456.046 kb on - strand, within PS417_02025 at 456.046 kb on - strand, within PS417_02025 at 456.046 kb on - strand, within PS417_02025 at 456.072 kb on + strand, within PS417_02025 at 456.096 kb on + strand, within PS417_02025 at 456.097 kb on - strand, within PS417_02025 at 456.144 kb on + strand, within PS417_02025 at 456.467 kb on + strand at 456.503 kb on + strand at 456.557 kb on + strand, within PS417_02030 at 456.557 kb on + strand, within PS417_02030 at 456.557 kb on + strand, within PS417_02030 at 456.733 kb on + strand, within PS417_02030 at 456.734 kb on - strand, within PS417_02030 at 457.011 kb on - strand at 457.224 kb on - strand, within PS417_02030 at 457.224 kb on - strand, within PS417_02030 at 457.224 kb on - strand, within PS417_02030 at 457.669 kb on + strand at 457.670 kb on - strand at 457.897 kb on + strand, within PS417_02035 at 457.898 kb on - strand, within PS417_02035 at 457.953 kb on - strand, within PS417_02035 at 458.009 kb on - strand, within PS417_02035 at 458.114 kb on - strand, within PS417_02035 at 458.378 kb on + strand at 458.379 kb on - strand at 458.408 kb on + strand, within PS417_02040 at 458.408 kb on + strand, within PS417_02040 at 458.409 kb on - strand, within PS417_02040 at 458.409 kb on - strand, within PS417_02040
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 455,868 + +0.4 456,045 + PS417_02025 0.27 -0.6 456,046 - PS417_02025 0.28 +0.4 456,046 - PS417_02025 0.28 -0.1 456,046 - PS417_02025 0.28 -0.1 456,072 + PS417_02025 0.33 +0.2 456,096 + PS417_02025 0.39 +0.3 456,097 - PS417_02025 0.39 -0.0 456,144 + PS417_02025 0.49 +0.7 456,467 + -0.9 456,503 + +0.7 456,557 + PS417_02030 0.13 -0.3 456,557 + PS417_02030 0.13 -0.3 456,557 + PS417_02030 0.13 -1.1 456,733 + PS417_02030 0.27 +0.3 456,734 - PS417_02030 0.27 -1.0 457,011 - +1.4 457,224 - PS417_02030 0.67 -3.0 457,224 - PS417_02030 0.67 -3.0 457,224 - PS417_02030 0.67 -0.7 457,669 + -1.9 457,670 - -1.5 457,897 + PS417_02035 0.37 -0.1 457,898 - PS417_02035 0.37 +2.8 457,953 - PS417_02035 0.45 -1.9 458,009 - PS417_02035 0.53 +0.3 458,114 - PS417_02035 0.67 -0.1 458,378 + +0.1 458,379 - +2.7 458,408 + PS417_02040 0.12 -0.5 458,408 + PS417_02040 0.12 +0.4 458,409 - PS417_02040 0.13 -2.2 458,409 - PS417_02040 0.13 -0.8
Or see this region's nucleotide sequence