Strain Fitness in Pseudomonas simiae WCS417 around PS417_20430

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,432,201	-				-0.6
4,432,282	+				-0.4
4,432,292	+				-0.4
4,432,293	-				-0.7
4,432,308	+				+0.8
4,432,372	+				-1.7
4,432,372	+				+0.6
4,432,372	+				+0.3
4,432,373	-				+0.3
4,432,373	-				+1.3
4,432,373	-				+0.5
4,432,375	+				+0.3
4,432,376	-				-0.5
4,432,376	-				-0.5
4,432,376	-				-0.8
4,432,376	-				+0.6
4,432,376	-				+1.3
4,432,379	+				-2.8
4,432,379	+				+1.6
4,432,379	+				+0.3
4,432,380	-				+1.3
4,432,380	-				+0.4
4,432,380	-				+1.6
4,432,380	-				+0.1
4,432,410	+				+1.0
4,432,411	-				-1.2
4,432,498	+		PS417_20425	0.14	+1.6
4,432,507	+		PS417_20425	0.15	+1.7
4,432,507	+		PS417_20425	0.15	-0.2
4,432,508	-		PS417_20425	0.16	-1.5
4,432,508	-		PS417_20425	0.16	+0.0
4,432,508	-				-0.3
4,432,528	+		PS417_20425	0.19	+0.7
4,432,538	-		PS417_20425	0.21	-0.2
4,432,538	-		PS417_20425	0.21	+1.4
4,432,594	+		PS417_20425	0.30	-0.5
4,432,605	-		PS417_20425	0.32	+0.8
4,432,616	+		PS417_20425	0.34	-1.0
4,432,616	+		PS417_20425	0.34	+0.1
4,432,617	-		PS417_20425	0.34	-0.6
4,432,617	-		PS417_20425	0.34	+0.4
4,432,647	-		PS417_20425	0.40	+0.9
4,432,655	+		PS417_20425	0.41	+0.0
4,432,655	+		PS417_20425	0.41	-1.8
4,432,655	+		PS417_20425	0.41	+0.4
4,432,655	+		PS417_20425	0.41	+2.1
4,432,655	+		PS417_20425	0.41	+0.9
4,432,656	-		PS417_20425	0.41	-1.3
4,432,656	-		PS417_20425	0.41	-0.2
4,432,656	-		PS417_20425	0.41	+0.7
4,432,656	-		PS417_20425	0.41	-0.6
4,432,656	-		PS417_20425	0.41	+0.7
4,432,671	+		PS417_20425	0.44	+0.6
4,432,671	+		PS417_20425	0.44	+0.9
4,432,672	-		PS417_20425	0.44	+0.5
4,432,700	-		PS417_20425	0.49	+0.6
4,432,804	+		PS417_20425	0.66	+2.3
4,432,804	+		PS417_20425	0.66	-1.0
4,432,804	+				+0.7
4,432,804	+		PS417_20425	0.66	+0.0
4,432,805	-		PS417_20425	0.67	-2.0
4,432,805	-		PS417_20425	0.67	-0.3
4,432,874	+		PS417_20425	0.79	-3.2
4,432,920	+		PS417_20425	0.86	-2.5
4,432,921	-		PS417_20425	0.87	+0.4
4,432,921	-		PS417_20425	0.87	-0.6
4,433,114	+				-0.2
4,433,114	+				-0.1
4,433,114	+				-3.0
4,433,115	-				+1.7
4,433,126	+				-0.6
4,433,126	+				-0.7
4,433,126	+				-1.0
4,433,126	+				-0.1
4,433,126	+				-1.3
4,433,126	+				+0.3
4,433,127	-				+1.0
4,433,193	-		PS417_20430	0.10	-1.4
4,433,270	-		PS417_20430	0.23	-0.2
4,433,334	+		PS417_20430	0.34	-2.0
4,433,361	-		PS417_20430	0.38	-3.5
4,433,528	-		PS417_20430	0.66	-1.4
4,433,548	+				+0.3
4,433,549	-		PS417_20430	0.70	+0.7
4,433,549	-		PS417_20430	0.70	+0.3
4,433,552	+		PS417_20430	0.71	-0.9
4,433,552	+		PS417_20430	0.71	-0.8
4,433,552	+		PS417_20430	0.71	-1.5
4,433,553	-		PS417_20430	0.71	+0.3
4,433,553	-		PS417_20430	0.71	-0.1
4,433,597	+		PS417_20430	0.78	+0.4
4,433,598	-		PS417_20430	0.78	-0.3
4,433,598	-		PS417_20430	0.78	-0.6
4,433,726	+				-0.3
4,433,726	+				+0.3
4,433,726	+				-0.2
4,433,727	-				-0.2
4,433,727	-				+0.9
4,433,727	-				-0.2
4,433,728	+				-0.6
4,433,728	+				-1.0
4,433,729	-				-0.9
4,433,729	-				-0.7
4,433,729	-				+1.8
4,433,760	+				+0.4
4,433,760	+				-0.5
4,433,761	-				-1.0
4,433,763	+				-1.0
4,433,930	-				+0.7
4,434,028	+				+2.9
4,434,041	-				-1.9
4,434,041	-				+1.7
4,434,046	+				-0.6
4,434,046	+				-1.9
4,434,046	+				-2.4
4,434,046	+				-1.0
4,434,047	-				-0.5
4,434,047	-				+0.3
4,434,047	-				+0.9
4,434,142	+				-1.9
4,434,161	+				+0.0
4,434,161	+				-0.4
4,434,162	-				+1.2
4,434,228	+		PS417_20435	0.12	-0.2
4,434,358	+		PS417_20435	0.15	+0.6
4,434,358	+		PS417_20435	0.15	-1.1
4,434,358	+		PS417_20435	0.15	+0.2
4,434,358	+		PS417_20435	0.15	+1.3
4,434,358	+		PS417_20435	0.15	-0.4
4,434,359	-		PS417_20435	0.15	+2.0
4,434,359	-		PS417_20435	0.15	+0.8
4,434,359	-		PS417_20435	0.15	+0.5
4,434,359	-		PS417_20435	0.15	+1.3
4,434,362	+		PS417_20435	0.15	+1.1
4,434,362	+		PS417_20435	0.15	-1.0
4,434,362	+		PS417_20435	0.15	-0.3
4,434,362	+		PS417_20435	0.15	+0.6
4,434,362	+		PS417_20435	0.15	-1.7
4,434,362	+		PS417_20435	0.15	+0.5
4,434,362	+		PS417_20435	0.15	+0.0
4,434,362	+		PS417_20435	0.15	+0.3
4,434,363	-		PS417_20435	0.15	-0.1
4,434,363	-		PS417_20435	0.15	+0.4
4,434,363	-		PS417_20435	0.15	-0.9
4,434,363	-		PS417_20435	0.15	-0.3
4,434,363	-		PS417_20435	0.15	+1.0
4,434,363	-		PS417_20435	0.15	+1.3
4,434,363	-		PS417_20435	0.15	-0.3
4,434,363	-		PS417_20435	0.15	-1.0
4,434,363	-		PS417_20435	0.15	+0.2
4,434,363	-		PS417_20435	0.15	+0.6
4,434,363	-		PS417_20435	0.15	-0.1
4,434,363	-		PS417_20435	0.15	+1.5
4,434,363	-		PS417_20435	0.15	+0.9
4,434,363	-		PS417_20435	0.15	-0.9
4,434,363	-		PS417_20435	0.15	+0.9
4,434,363	-		PS417_20435	0.15	-0.5
4,434,366	+		PS417_20435	0.15	+0.0
4,434,366	+		PS417_20435	0.15	+1.5
4,434,366	+		PS417_20435	0.15	-1.2
4,434,367	-		PS417_20435	0.15	-0.3
4,434,486	-		PS417_20435	0.19	+0.0
4,434,507	+		PS417_20435	0.19	+1.4
4,434,543	-		PS417_20435	0.20	-2.5
4,434,543	-		PS417_20435	0.20	+0.6
4,434,543	-		PS417_20435	0.20	+1.9
4,434,595	+		PS417_20435	0.22	-3.5
4,434,595	+		PS417_20435	0.22	-1.5
4,434,595	+		PS417_20435	0.22	-0.6
4,434,595	+		PS417_20435	0.22	+1.9
4,434,596	-		PS417_20435	0.22	+0.4
4,434,596	-		PS417_20435	0.22	+0.7
4,434,658	+		PS417_20435	0.24	+0.5
4,434,659	-		PS417_20435	0.24	-1.2
4,434,659	-		PS417_20435	0.24	-1.1
4,434,718	-		PS417_20435	0.25	+0.5
4,434,718	-		PS417_20435	0.25	-0.1
4,434,718	-		PS417_20435	0.25	-0.3
4,434,718	-		PS417_20435	0.25	+1.0