Strain Fitness in Pseudomonas simiae WCS417 around PS417_20280

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,403,345	-				-1.2
4,403,345	-				+0.4
4,403,345	-				+0.4
4,403,450	+				+1.7
4,403,450	+				+0.8
4,403,451	-				+0.3
4,403,479	-				+0.3
4,403,480	+				-0.5
4,403,481	-				-1.7
4,403,481	-				+0.3
4,403,481	-				-0.4
4,403,633	-		PS417_20280	0.17	-1.5
4,403,633	-		PS417_20280	0.17	+1.6
4,403,765	-		PS417_20280	0.33	+0.3
4,403,880	+		PS417_20280	0.47	+2.5
4,403,884	+		PS417_20280	0.48	-1.7
4,403,884	+		PS417_20280	0.48	+0.9
4,403,885	-		PS417_20280	0.48	-0.6
4,403,885	-				+3.1
4,403,926	+		PS417_20280	0.53	+0.4
4,403,926	+		PS417_20280	0.53	+1.6
4,403,927	-		PS417_20280	0.53	-1.1
4,404,055	+		PS417_20280	0.69	+1.3
4,404,056	-		PS417_20280	0.69	-1.3
4,404,056	-		PS417_20280	0.69	+3.4
4,404,286	+				-1.5
4,404,328	+				-0.6
4,404,329	-				-0.4
4,404,331	+				+1.3
4,404,351	+				+1.3
4,404,351	+				+0.2
4,404,351	+				+0.3
4,404,351	+				+0.6
4,404,352	-				+0.4
4,404,352	-				+0.6
4,404,352	-				+0.8
4,404,352	-				-1.3
4,404,352	-				-0.1
4,404,355	-				-0.6
4,404,610	+				+0.5
4,404,611	-				+0.0
4,404,611	-				+0.8
4,404,861	+				-2.0
4,404,862	-				+0.1
4,404,862	-				-0.8
4,404,862	-				-0.5
4,404,865	+				-1.0
4,404,877	-				+1.4
4,404,916	-		PS417_20285	0.12	+0.6
4,404,920	+		PS417_20285	0.13	+0.1
4,404,921	-		PS417_20285	0.13	-0.9
4,404,921	-		PS417_20285	0.13	-0.2
4,404,997	+		PS417_20285	0.19	-1.6
4,405,052	-		PS417_20285	0.23	-0.7
4,405,090	-		PS417_20285	0.26	-0.7
4,405,118	+		PS417_20285	0.28	+0.4
4,405,118	+		PS417_20285	0.28	+0.6
4,405,118	+		PS417_20285	0.28	-0.1
4,405,118	+		PS417_20285	0.28	-2.9
4,405,118	+		PS417_20285	0.28	-1.7
4,405,119	-		PS417_20285	0.28	-1.6
4,405,121	+		PS417_20285	0.29	+0.2
4,405,122	-		PS417_20285	0.29	+0.1
4,405,188	+		PS417_20285	0.34	+0.1
4,405,242	+		PS417_20285	0.38	-0.1
4,405,295	+		PS417_20285	0.42	-3.5