Strain Fitness in Pseudomonas simiae WCS417 around PS417_20235

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,394,527	+		PS417_20225	0.69	+1.5
4,394,550	-		PS417_20225	0.72	+1.6
4,394,662	+		PS417_20225	0.86	-2.5
4,394,663	-		PS417_20225	0.86	-1.5
4,394,675	-		PS417_20225	0.87	+0.0
4,394,676	+		PS417_20225	0.87	+1.0
4,394,737	+				-2.3
4,394,738	-				+1.0
4,394,738	-				-0.8
4,394,764	-				+2.0
4,394,789	+				-1.0
4,395,034	+				+0.5
4,395,112	+				+1.6
4,395,113	-				+0.7
4,395,282	+				+0.4
4,395,337	+				+1.4
4,395,509	-				+1.1
4,395,762	+		PS417_20235	0.37	+2.1
4,395,762	+		PS417_20235	0.37	+0.1
4,395,762	+		PS417_20235	0.37	-0.0
4,395,763	-		PS417_20235	0.37	+1.5
4,395,763	-				+2.3
4,395,763	-		PS417_20235	0.37	-1.9
4,395,763	-		PS417_20235	0.37	-1.2
4,395,880	+		PS417_20235	0.54	-0.9
4,395,880	+		PS417_20235	0.54	+0.3
4,395,881	-		PS417_20235	0.54	-2.4
4,395,994	-		PS417_20235	0.69	-3.3
4,396,047	-		PS417_20235	0.77	-0.0
4,396,111	-		PS417_20235	0.86	+0.9
4,396,149	+				+1.1
4,396,209	+				+0.2
4,396,209	+				+1.5
4,396,210	-				-0.5
4,396,299	+				-1.7
4,396,308	+				+2.3
4,396,309	-				+0.1
4,396,309	-				-0.3
4,396,309	-				-1.3
4,396,311	+				-0.7
4,396,312	-				-2.3
4,396,366	+				-1.7
4,396,381	-		PS417_20240	0.12	-1.4
4,396,403	+		PS417_20240	0.14	-1.4
4,396,557	+		PS417_20240	0.32	-0.5
4,396,712	+		PS417_20240	0.50	+1.7
4,396,997	+		PS417_20240	0.83	-0.2
4,396,998	-		PS417_20240	0.83	-1.5
4,397,119	+				-0.3
4,397,120	-				+0.2
4,397,120	-				-0.9
4,397,120	-				-1.3