Strain Fitness in Pseudomonas simiae WCS417 around PS417_20225

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,393,019	+		PS417_20215	0.86	-2.7
4,393,138	+				-0.5
4,393,180	+				-1.4
4,393,181	-				-1.0
4,393,181	-				+1.4
4,393,181	-				-1.0
4,393,181	-				+1.2
4,393,292	-				+4.1
4,393,292	-				+0.1
4,393,361	+				-3.4
4,393,369	+				-0.3
4,393,413	-				-0.1
4,393,447	+				-1.3
4,393,447	+				+0.3
4,393,552	+		PS417_20220	0.33	-0.7
4,393,552	+		PS417_20220	0.33	-1.3
4,393,552	+		PS417_20220	0.33	-3.0
4,393,552	+		PS417_20220	0.33	-0.1
4,393,553	-		PS417_20220	0.34	+0.5
4,393,651	+		PS417_20220	0.58	+0.9
4,393,652	-		PS417_20220	0.58	-0.7
4,393,652	-		PS417_20220	0.58	-1.0
4,393,652	-		PS417_20220	0.58	+1.2
4,393,660	+		PS417_20220	0.60	+1.0
4,393,660	+		PS417_20220	0.60	+0.4
4,393,660	+		PS417_20220	0.60	-1.7
4,393,661	-		PS417_20220	0.61	-0.4
4,393,661	-		PS417_20220	0.61	+0.6
4,393,661	-		PS417_20220	0.61	+1.7
4,393,661	-		PS417_20220	0.61	+0.0
4,393,721	+		PS417_20220	0.76	+0.1
4,393,721	+		PS417_20220	0.76	-1.0
4,393,721	+		PS417_20220	0.76	-1.2
4,393,721	+		PS417_20220	0.76	-2.0
4,393,721	+		PS417_20220	0.76	-0.6
4,393,722	-		PS417_20220	0.76	-1.7
4,393,722	-		PS417_20220	0.76	-3.1
4,393,723	+		PS417_20220	0.76	-1.4
4,393,723	+		PS417_20220	0.76	+0.1
4,393,724	-		PS417_20220	0.76	-0.7
4,393,724	-		PS417_20220	0.76	+1.1
4,393,724	-		PS417_20220	0.76	-2.6
4,393,793	-				+0.9
4,393,833	+				-1.0
4,393,886	-				-0.1
4,393,926	+				+0.2
4,393,952	+				-0.6
4,393,953	-				+0.8
4,393,953	-				-2.0
4,393,953	-				-0.7
4,393,995	+				+1.3
4,393,996	-				-0.2
4,393,996	-				+0.5
4,393,996	-				-0.3
4,393,996	-				-1.5
4,394,203	+		PS417_20225	0.31	+1.0
4,394,350	-		PS417_20225	0.48	-0.7
4,394,350	-		PS417_20225	0.48	-2.3
4,394,424	+		PS417_20225	0.57	+0.3
4,394,442	+		PS417_20225	0.59	-0.1
4,394,527	+		PS417_20225	0.69	+1.5
4,394,550	-		PS417_20225	0.72	+1.6
4,394,662	+		PS417_20225	0.86	-2.5
4,394,663	-		PS417_20225	0.86	-1.5
4,394,675	-		PS417_20225	0.87	+0.0
4,394,676	+		PS417_20225	0.87	+1.0
4,394,737	+				-2.3
4,394,738	-				+1.0
4,394,738	-				-0.8
4,394,764	-				+2.0
4,394,789	+				-1.0
4,395,034	+				+0.5
4,395,112	+				+1.6
4,395,113	-				+0.7
4,395,282	+				+0.4
4,395,337	+				+1.4
4,395,509	-				+1.1
4,395,762	+		PS417_20235	0.37	+2.1
4,395,762	+		PS417_20235	0.37	+0.1
4,395,762	+		PS417_20235	0.37	-0.0
4,395,763	-		PS417_20235	0.37	+1.5
4,395,763	-				+2.3
4,395,763	-		PS417_20235	0.37	-1.9
4,395,763	-		PS417_20235	0.37	-1.2